View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_89 (Length: 344)
Name: NF18404_low_89
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 39128581 - 39128258
Alignment:
| Q |
1 |
gttgacacaaagcataaacacagttcaaaatgatatacaccatggaaatagacatgtagtaattacaaaacaagggtnnnnnnnnnnnnnnnntcaaaca |
100 |
Q |
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| T |
39128581 |
gttgacacaaagcataaacacagttcaaaatgataaacaccatggaaatagacatgtagtaattacaaaacaagggtaaaaaaaacaaaaaa-tcaaaca |
39128483 |
T |
|
| Q |
101 |
taaacacagtgatactattgtattgacacaaagcataaaatggttttgaaaccctctcactaacaaaaataaaacaaacatttactactaccattaacaa |
200 |
Q |
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| T |
39128482 |
taaacaaagtgatactattgtattgacacagagcataaaatggttttgaaaccctctcactaacaaaaataaaacaaacatttactactaccattaacaa |
39128383 |
T |
|
| Q |
201 |
aatatataggtaaaagataagaaatgtggttcttttagctagaatacatgatgataatgttgaaaagaagaagctttgtttaggaaatttcaaaaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128382 |
aatatataggtaaaagataagaaatgtgattcttttagctagaatacattatgataatgttgaaaagaagaagctttgtttaggaaatttcaaaaaacaa |
39128283 |
T |
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| Q |
301 |
acccaaatactaaacacctagtgac |
325 |
Q |
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| T |
39128282 |
acccaaatactaaacacctagtgac |
39128258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 39128609 - 39128564
Alignment:
| Q |
94 |
tcaaacataaacacagtgatactattgtattgacacaaagcataaa |
139 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39128609 |
tcaaacataaacacagtgatactattgtgttgacacaaagcataaa |
39128564 |
T |
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