View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_9 (Length: 685)
Name: NF18404_low_9
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 25 - 671
Target Start/End: Complemental strand, 26123439 - 26122813
Alignment:
| Q |
25 |
aacatgtatattatcaaccaacaccaacattattggtgtgtaatgctttttatttttagaattttactacttcatttacagttttgtcatacatttctca |
124 |
Q |
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| T |
26123439 |
aacatgtatattatcaaccaacaccaacattattggtgtgtaatgctttttatttttagaattttactacttcatttacagttttgtcatacatttctca |
26123340 |
T |
|
| Q |
125 |
ataatataaaagaccaaagnnnnnnngagacataaactactatataataattaatgtataccctaccaaaaa-tcaaattctcaatgctaattgattgaa |
223 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26123339 |
ataaaataaaagac-----------------ataaactactatataataattaatgtataccctaccaaaaaatcaaattctcaatgctaattgattgaa |
26123257 |
T |
|
| Q |
224 |
atagaagccaagaatacatgatatatagaagaccaacgtcaacctcataatcctccaaaatatccatccaaggtatcgatcatccctcaccactctcttt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26123256 |
atagaagccaagaatacatgatatatagaagaccaacgtcaacctcacaatcctccaaaatatccatccaaggtatcgatcatccctcaccactctcttt |
26123157 |
T |
|
| Q |
324 |
caatatatatcattttccaatagaaaattccttatttttgcaagttgagaaccaacatccaaattccaaaccacacattataaaagtcccacatgaaaca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26123156 |
caatatatatcattttccaatagaaaattccttatttttgcaagttgagaaccaacatccaaattccaaaccacacattataaaagtcccacatgaaaca |
26123057 |
T |
|
| Q |
424 |
agacacgtacgtttgtcacataccatacaaaagaacccctcgtagtcttgtcttgtggggtgacgtgtgaactaatttcccactcatttcattctcctta |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26123056 |
agacacgtacgtttgtcacataccatacaaaagaacccctcgtagtcttgtcttgtggggtgacgtgtgaactaatttcccactcatttcattctcctca |
26122957 |
T |
|
| Q |
524 |
tgcctttaattttcttccccatacacacactgtcacacaaaaccaagactcaaaaataatattcatagcacacagaaattaaaatatcaacactatatac |
623 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26122956 |
tgcctttaattttcttccccat----acactgtcacacaaaaccaagactcaaaaataatattcatagcacacagaaattaaaatatcaacactatatac |
26122861 |
T |
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| Q |
624 |
tttcttcaatatggtcctgttttgcatgaaagagaacaacacaaacac |
671 |
Q |
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| T |
26122860 |
attcttcaatatggtcctgttttgcatgaaagagaacaacacaaacac |
26122813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 42365288 - 42365329
Alignment:
| Q |
417 |
tgaaacaagacacgtacgtttgtcacataccatacaaaagaa |
458 |
Q |
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| T |
42365288 |
tgaaacaagacacgtagatttgtcacttaccatacaaaagaa |
42365329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 47509122 - 47509155
Alignment:
| Q |
20 |
ttttcaacatgtatattatcaaccaacaccaaca |
53 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
47509122 |
ttttcaacatgtatattttcaaccaacaccaaca |
47509155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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