View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_90 (Length: 343)
Name: NF18404_low_90
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_90 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 18642676 - 18642347
Alignment:
| Q |
14 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
113 |
Q |
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| T |
18642676 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
18642577 |
T |
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| Q |
114 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgnnnnnnnaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
213 |
Q |
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| T |
18642576 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgtttttttaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
18642477 |
T |
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| Q |
214 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
313 |
Q |
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| T |
18642476 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
18642377 |
T |
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| Q |
314 |
ttaaaaaatcttttcatacagtgcaaatat |
343 |
Q |
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| T |
18642376 |
ttaaaaaatcttttcatacagtgcaaatat |
18642347 |
T |
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