View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_92 (Length: 339)
Name: NF18404_low_92
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_92 |
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| [»] scaffold1302 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 44636662 - 44636974
Alignment:
| Q |
12 |
tcatcataatgtatgtggttggtttcaagaattttgttaaggactcgtctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636662 |
tcatcataatgtatgtggttggtttcaagaattttgttaaggactcgtctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaat |
44636761 |
T |
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| Q |
112 |
tgtataggatgcaacttagtacttcaaagggtaaagcactgattctgtctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636762 |
tgtataggatgcaacttagtacttcaaagggtaaagcactgattctgtctgcatttggcattgctcgccagagtggtttccatcgctttgagagaaggct |
44636861 |
T |
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| Q |
212 |
tgtgagggcgatttgtttagggggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgttgttgttggtggtgccgcc |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636862 |
tgtgagggcgatttgtttggggggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgttgttgttggtggtgccgcc |
44636961 |
T |
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| Q |
312 |
atagttaagaagt |
324 |
Q |
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||||||||||||| |
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| T |
44636962 |
atagttaagaagt |
44636974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 4140870 - 4140635
Alignment:
| Q |
58 |
gtctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattct |
157 |
Q |
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| T |
4140870 |
gtctccagcgccttgagagaagggatgcaacgaagatttgttttgtaggcaaacgagacaggatgcgacataatagttcgacgcgtaaagcactgattct |
4140771 |
T |
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| Q |
158 |
gtctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtgagggcgatttgtttagggggcaaatatgagaggatgtgatat |
257 |
Q |
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| T |
4140770 |
gtctgcgtttgggattgttagccatagtggattccatcgctttgaaagaaggcttgtgagggcgatttgtgaggagggcaaaaatgagaggatgtgatgg |
4140671 |
T |
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| Q |
258 |
attatttcatcgggtaaatcgctgatcctgtctgtt |
293 |
Q |
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| T |
4140670 |
agtatttcatccggtaaatcgctgatcctgtctgtt |
4140635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 25127519 - 25127605
Alignment:
| Q |
141 |
ggtaaagcactgattctgtctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtgagggcgatttgt |
227 |
Q |
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| T |
25127519 |
ggtaaagcgctgattctgtctgcgtttggcattgctaaccagagtggattccatcgtttcgatagaaggcttatgagagcgatttgt |
25127605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 7016554 - 7016710
Alignment:
| Q |
59 |
tctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattctg |
158 |
Q |
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| T |
7016554 |
tctccagcgccttgagagaagggatgtgaccatgatttgttttgcaggcaaaagagataggatgcgacatagcagttcatcaggtaaaatactgattcta |
7016653 |
T |
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| Q |
159 |
tctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtg |
215 |
Q |
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| T |
7016654 |
tctgcatttggcatccctagccagactcgcctccatcgctttgagagaaggcttgtg |
7016710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 7031912 - 7032068
Alignment:
| Q |
59 |
tctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattctg |
158 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| | |||||| ||||||||| || ||| | |||| |||||| ||||||||| |
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| T |
7031912 |
tctccagcgccttgagagaagggatgtgaccatgatttgttttgcaggcaaaagagataggatgcgacatagcagttcatcaggtaaaatactgattcta |
7032011 |
T |
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| Q |
159 |
tctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtg |
215 |
Q |
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| T |
7032012 |
tctgcatttggcatccctagccagactcgcctccatcgctttgagagaaggcttgtg |
7032068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 7061056 - 7061212
Alignment:
| Q |
59 |
tctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattctg |
158 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| | |||||| ||||||||| || ||| | |||| |||||| ||||||||| |
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| T |
7061056 |
tctccagcgccttgagagaagggatgtgaccatgatttgttttgcaggcaaaagagataggatgcgacatagcagttcatcaggtaaaatactgattcta |
7061155 |
T |
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| Q |
159 |
tctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtg |
215 |
Q |
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| T |
7061156 |
tctgcatttggcatccctagccagactcgcctccatcgctttgagagaaggcttgtg |
7061212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 7065540 - 7065696
Alignment:
| Q |
59 |
tctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattctg |
158 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| | |||||| ||||||||| || ||| | |||| |||||| ||||||||| |
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| T |
7065540 |
tctccagcgccttgagagaagggatgtgaccatgatttgttttgcaggcaaaagagataggatgcgacatagcagttcatcaggtaaaatactgattcta |
7065639 |
T |
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| Q |
159 |
tctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtg |
215 |
Q |
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| T |
7065640 |
tctgcatttggcatccctagccagactcgcctccatcgctttgagagaaggcttgtg |
7065696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1302 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1302
Description:
Target: scaffold1302; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 1776 - 1932
Alignment:
| Q |
59 |
tctccagcgccatgagagaatggctgtgacgaagaattgtttggtgggcaaattgtataggatgcaacttagtacttcaaagggtaaagcactgattctg |
158 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| | |||||| ||||||||| || ||| | |||| |||||| ||||||||| |
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| T |
1776 |
tctccagcgccttgagagaagggatgtgaccatgatttgttttgcaggcaaaagagataggatgcgacatagcagttcatcaggtaaaatactgattcta |
1875 |
T |
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| Q |
159 |
tctgcgtttggcattgctcgccagagtggtttccatcgctttgagagaaggcttgtg |
215 |
Q |
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||||| |||||||| || |||||| | | |||||||||||||||||||||||||| |
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| T |
1876 |
tctgcatttggcatccctagccagactcgcctccatcgctttgagagaaggcttgtg |
1932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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