View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_93 (Length: 338)

Name: NF18404_low_93
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_93
NF18404_low_93
[»] chr2 (12 HSPs)
chr2 (193-313)||(44615274-44615394)
chr2 (154-241)||(44749731-44749818)
chr2 (18-100)||(44749813-44749895)
chr2 (197-302)||(44624658-44624763)
chr2 (198-292)||(39472969-39473063)
chr2 (200-292)||(39396853-39396945)
chr2 (186-310)||(39138517-39138641)
chr2 (198-310)||(39152930-39153042)
chr2 (197-309)||(39604188-39604300)
chr2 (234-301)||(39196745-39196812)
chr2 (234-301)||(39223594-39223661)
chr2 (197-296)||(44895305-44895404)
[»] chr5 (2 HSPs)
chr5 (186-320)||(17060507-17060641)
chr5 (232-301)||(33562169-33562238)
[»] chr8 (2 HSPs)
chr8 (185-299)||(44950052-44950169)
chr8 (255-299)||(44730102-44730146)
[»] chr6 (1 HSPs)
chr6 (185-292)||(16114256-16114363)
[»] chr7 (1 HSPs)
chr7 (234-292)||(19808795-19808853)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 44615394 - 44615274
Alignment:
Q  193 gccttcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattct 292  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  44615394 gccttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctgatgattct 44615295  T
Q  293 cgcaaattatatagaatgcca 313  Q
    |||||||||| ||||||||||    
T  44615294 cgcaaattatctagaatgcca 44615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 44749818 - 44749731
Alignment:
Q  154 caaaagaaaacaaaaatagaaagtactagtctagatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749818 caaaagaaaacaaaaatagaaagtactagtctagatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatc 44749731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 44749895 - 44749813
Alignment:
Q  18 aagcttgcttcaatgacaactcaaagtcttctcgtagaaattacagttccaaatggtgaaagaggtattgacaatcccaaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749895 aagcttgcttcaatgacaactcaaagtcttctcgtagaaattacagttccaaatggtgaaagaggtattgacaatcccaaaag 44749813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 44624763 - 44624658
Alignment:
Q  197 tcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgca 296  Q
    ||||||||||||||||||||||| || |||||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  44624763 tcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatccaaaacaatttttgctggatctgatgattctcgca 44624664  T
Q  297 aattat 302  Q
    ||||||    
T  44624663 aattat 44624658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 39472969 - 39473063
Alignment:
Q  198 catcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattct 292  Q
    |||||||||||||||| | ||| |||||||||  | ||||||| || ||||| || |||||||||| ||||| ||||||||||||||||||||||    
T  39472969 catcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatgattct 39473063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 39396853 - 39396945
Alignment:
Q  200 tcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattct 292  Q
    ||||||| |||| | ||||| |||||||||  ||||||||| ||||||||| | |||||||||||||||| | ||| ||||||||||||||||    
T  39396853 tcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaagtcttgatggatctgatgattct 39396945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 39138641 - 39138517
Alignment:
Q  186 agatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctga 285  Q
    |||||| ||| ||||||||||||||||| |  || || ||||||  | ||||||| || || ||  | |||||||||||||||| |||||||||||||||    
T  39138641 agatgcagccatcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctga 39138542  T
Q  286 tgattctcgcaaattatatagaatg 310  Q
    ||||||| ||| ||||  |||||||    
T  39138541 tgattcttgcagattaactagaatg 39138517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 39153042 - 39152930
Alignment:
Q  198 catcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgcaa 297  Q
    |||| ||||||||||| | ||| || ||||||  | ||||||| || |||||  | ||||||||||| ||||||||||||||||||||||||||| |||     
T  39153042 catctataatcacagcatggtctccgttcttataccgtggaataattgggttctgtattatatccaacacaatttttgctggatctgatgattcttgcag 39152943  T
Q  298 attatatagaatg 310  Q
     |||| |||||||    
T  39152942 gttatctagaatg 39152930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 39604300 - 39604188
Alignment:
Q  197 tcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgca 296  Q
    ||||||||||| ||||| ||||| ||| |||||  |  | |||| ||||| ||  | |||||||||||||||| ||||| ||||||||||||| || |||    
T  39604300 tcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaacaacttttgatggatctgatgatccttgca 39604201  T
Q  297 aattatatagaat 309  Q
     ||||| ||||||    
T  39604200 gattatctagaat 39604188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 39196745 - 39196812
Alignment:
Q  234 gtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgcaaatta 301  Q
    ||||||| |||||||| || || || |||||||||| ||||| |||||||||||||||| ||| ||||    
T  39196745 gtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39196812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 39223661 - 39223594
Alignment:
Q  234 gtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgcaaatta 301  Q
    ||||||| |||||||| || || || |||||||||| ||||| |||||||||||||||| ||| ||||    
T  39223661 gtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39223594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 44895305 - 44895404
Alignment:
Q  197 tcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgca 296  Q
    |||||||||| || | | |||||| ||||||||  |||||| ||  | |||||  | |||||||||||||||| |||||| |||| ||||||||||||||    
T  44895305 tcatcaataaccaaatcattgtcatccttcttactcagtggcatactagggttctgtattatatccaaaacaagttttgcaggatttgatgattctcgca 44895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 320
Target Start/End: Complemental strand, 17060641 - 17060507
Alignment:
Q  186 agatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctga 285  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |  |||| ||||||||||||||||| |||||| ||    
T  17060641 agatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaatttttgatggatccga 17060542  T
Q  286 tgattctcgcaaattatatagaatgccagattcct 320  Q
    ||||||| ||||||||  ||||||| |||||||||    
T  17060541 tgattcttgcaaattaactagaatgtcagattcct 17060507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 33562238 - 33562169
Alignment:
Q  232 cagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattctcgcaaatta 301  Q
    ||||||||  |||||||| || || || |||||||||| ||||| |||||||||||||||| ||| ||||    
T  33562238 cagtggaaagatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 44950052 - 44950169
Alignment:
Q  185 tagatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggg---gtttagcattatatccaaaacaatttttgctggat 281  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||  |||||   || ||| |||||||||||||||||||| |||  ||    
T  44950052 tagacgcggctttcatcaataatcacagctttgtctcccttcttaggcaatggaaatatggggtcgtctagtattatatccaaaacaattttcgctatat 44950151  T
Q  282 ctgatgattctcgcaaat 299  Q
    ||||||||||||||||||    
T  44950152 ctgatgattctcgcaaat 44950169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 44730146 - 44730102
Alignment:
Q  255 ttatatccaaaacaatttttgctggatctgatgattctcgcaaat 299  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  44730146 ttatatccaaaactattttcgctagatccgatgattctcgcaaat 44730102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 16114363 - 16114256
Alignment:
Q  185 tagatgcggccttcatcaataatcacagctttgtcacccttcttaggcagtggaatcatggggtttagcattatatccaaaacaatttttgctggatctg 284  Q
    |||||| ||| |||||||||||||||||| ||||| |||||||||  ||||||| |   ||||||  | |||||||||||||||| | ||| ||||||||    
T  16114363 tagatgtggcattcatcaataatcacagcattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaacaagtcttgatggatctg 16114264  T
Q  285 atgattct 292  Q
     |||||||    
T  16114263 ctgattct 16114256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 19808853 - 19808795
Alignment:
Q  234 gtggaatcatggggtttagcattatatccaaaacaatttttgctggatctgatgattct 292  Q
    ||||||| || |||||| | |||||||||||||||| ||||| ||||||||||||||||    
T  19808853 gtggaataattgggttttgtattatatccaaaacaacttttgttggatctgatgattct 19808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University