View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_94 (Length: 335)
Name: NF18404_low_94
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 40885498 - 40885178
Alignment:
| Q |
1 |
tcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagtaaacaactagatttaa |
100 |
Q |
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| T |
40885498 |
tcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagaaaacaaatagatttaa |
40885399 |
T |
|
| Q |
101 |
aattaaaacttgaaggatgagacacaaaacacgtacctttgattttctccaatattttggtagtagtttccgaccattttttagtattggtgtcgacttt |
200 |
Q |
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| T |
40885398 |
aattaaaacttgcaggatgagacacaaaacacatacctttgattttctccaatattttggtagtagtttccgaccattttttagtattggtgtcgacttt |
40885299 |
T |
|
| Q |
201 |
caaagcacaagtctacaacgnnnnnnnntaac-aatgaaaagttannnnnnnnnnnngacaacaacnnnnnnntgaattagatgcatgtattttcaatgg |
299 |
Q |
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|||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||| | |
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| T |
40885298 |
caaagcacaagtctacaacgaaaaaaaataacaaatgaaaagttattttttgtttttgacaacaacaaaaaaatgaattagatgcatgtattttcaaagt |
40885199 |
T |
|
| Q |
300 |
aaataagagaacggcacaaac |
320 |
Q |
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||||||||||||||||||||| |
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| T |
40885198 |
aaataagagaacggcacaaac |
40885178 |
T |
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