View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_97 (Length: 330)
Name: NF18404_low_97
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 5528201 - 5527881
Alignment:
| Q |
1 |
gaatataaaaagtaaacttttgtttataattaagatcgaaaagagtattaattttactattgaaatcaactaactaattatttccttaagaaccacatgc |
100 |
Q |
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| T |
5528201 |
gaatataaaaaataaacttttacttataattaagatcaaaaagaatattaattttaccattgaaatcaactaactaattattttcttaagaaccacatgc |
5528102 |
T |
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| Q |
101 |
aacccaagtacgacaattaaaatgagacggaagaaatatttgttaaacttttgaaaagtgttaagagtttaagagagatgattaagtttnnnnnnnnnnn |
200 |
Q |
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| T |
5528101 |
aacccaagtacgacaattaaaatgagacggaagaaatatttgttaaacttttgaaaagtgttaagagtttaagagagatgattaagttt-taaaaaaaaa |
5528003 |
T |
|
| Q |
201 |
nnnnnnnnntgagtaatgtgcatatttaagattataagggatataaacaccctttgtagagtcacttcttgataatagtcaattatgttcaaaatttgat |
300 |
Q |
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| T |
5528002 |
aagtaaaaatgagtaatgtgcacatttaagattatatgggatataaacaccctttgtagagtcacttcttgataatagtcaattatgttcaaaatttgat |
5527903 |
T |
|
| Q |
301 |
gaaatgtaagactttgaggtct |
322 |
Q |
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| T |
5527902 |
gaaatgtaagactttgaggtct |
5527881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 39606973 - 39607016
Alignment:
| Q |
6 |
taaaaagtaaacttttgtttataattaagatcgaaaagagtatt |
49 |
Q |
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| T |
39606973 |
taaaaagtaaaaaattgtttataattaagatcgaaaagagtatt |
39607016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 38070428 - 38070369
Alignment:
| Q |
72 |
aactaattatttccttaagaaccacatgcaacccaagtacgacaattaaaatgagacgga |
131 |
Q |
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| T |
38070428 |
aactaattattttcttaagaattacatacaacccaaaaacgacaattaaaataagacgga |
38070369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 24983491 - 24983447
Alignment:
| Q |
49 |
taattttactattgaaatcaact-aactaattatttccttaagaa |
92 |
Q |
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| T |
24983491 |
taattttaccattgaaatcaactcaactaatcatttccttaagaa |
24983447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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