View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18405_high_10 (Length: 220)
Name: NF18405_high_10
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 2535073 - 2535260
Alignment:
| Q |
18 |
caatctaccactatcatgttcctcttgctgctgttgttgctctgttatgcctttcccgtcgtgtttgaatctttgaggaagtataacttatacttcaatc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2535073 |
caatctaccactatcatgatcctcttgctgctgttgttgctctgttatgcctttcccgtcgtgtttgaatatttgaggaagtataacttatacttcaatc |
2535172 |
T |
|
| Q |
118 |
gttttctgttaacattgctatttagaaaacttaattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2535173 |
cttttctgttaacattgctatttagaaaacttaattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcat |
2535260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 11447075 - 11446988
Alignment:
| Q |
118 |
gttttctgttaacattgctatttagaaaacttaattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11447075 |
gttttctgttaacattgctatttagaaaacttaattgttttgctcaaagaaaacttaattgtttacatgaactttgaacaacattcat |
11446988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11447785 - 11447743
Alignment:
| Q |
18 |
caatctaccactatcatgttcctcttgctgctgttgttgctct |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11447785 |
caatctaccactatcatgttcctcttgctgctgttgttgctct |
11447743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 47563702 - 47563618
Alignment:
| Q |
57 |
ctctgttatgcctttcccgtcgtgtttgaatctttgagg-aagtataacttatacttcaatcgttttctgt--taacattgctat |
138 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
47563702 |
ctctgttatgccttttccgtcacgtttgaatctttgaggaaagtataacttatacttcaatcgtttgctgtaataacattgctat |
47563618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University