View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_high_9 (Length: 225)
Name: NF18405_high_9
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 14599181 - 14598986
Alignment:
| Q |
15 |
caaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaaccc |
114 |
Q |
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| T |
14599181 |
caaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaacct |
14599082 |
T |
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| Q |
115 |
tggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggttagtaaatgtaatgtataatattttatgaataaaatat |
210 |
Q |
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| T |
14599081 |
tggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggttagtaaatgtaatgtataatattttatgaataaaatat |
14598986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 14609333 - 14609491
Alignment:
| Q |
15 |
caaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaaccc |
114 |
Q |
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| T |
14609333 |
caaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagcct |
14609432 |
T |
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| Q |
115 |
tggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggtt |
173 |
Q |
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| T |
14609433 |
tggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggtt |
14609491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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