View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18405_low_1 (Length: 721)

Name: NF18405_low_1
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18405_low_1
NF18405_low_1
[»] chr6 (14 HSPs)
chr6 (14-714)||(370567-371277)
chr6 (247-469)||(1459578-1459800)
chr6 (251-469)||(1470960-1471178)
chr6 (596-711)||(1453622-1453737)
chr6 (596-711)||(1465314-1465429)
chr6 (251-373)||(7564884-7565006)
chr6 (314-371)||(1442234-1442291)
chr6 (465-499)||(176354-176388)
chr6 (357-438)||(1453908-1453989)
chr6 (357-438)||(1465600-1465681)
chr6 (671-712)||(7564538-7564579)
chr6 (677-712)||(176599-176634)
chr6 (673-712)||(1459316-1459355)
chr6 (465-499)||(1442105-1442139)
[»] chr7 (3 HSPs)
chr7 (251-381)||(3926855-3926985)
chr7 (682-713)||(3927335-3927366)
chr7 (465-498)||(3927079-3927112)
[»] chr4 (4 HSPs)
chr4 (251-384)||(55419578-55419711)
chr4 (630-711)||(55419967-55420048)
chr4 (465-497)||(55419802-55419834)
chr4 (466-508)||(22672115-22672157)
[»] chr3 (5 HSPs)
chr3 (466-508)||(2442060-2442102)
chr3 (469-508)||(989420-989459)
chr3 (466-504)||(4142126-4142164)
chr3 (466-508)||(4157932-4157974)
chr3 (467-508)||(1931142-1931183)
[»] chr2 (1 HSPs)
chr2 (466-499)||(6538855-6538888)
[»] chr1 (2 HSPs)
chr1 (311-372)||(25478730-25478791)
chr1 (311-372)||(25869303-25869364)
[»] chr5 (2 HSPs)
chr5 (466-505)||(23766853-23766892)
chr5 (466-505)||(23816701-23816740)


Alignment Details
Target: chr6 (Bit Score: 640; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 14 - 714
Target Start/End: Complemental strand, 371277 - 370567
Alignment:
Q  14 aagttcaagatattgcaacctttggaaaatctaccttatagttcatttgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtag 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371277 aagttcaagatattgccacctttggaaaatctaccttatagttcatttgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtag 371178  T
Q  114 ttgccatttcgttcaaacaaatcgataattcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371177 ttgccatttcgttcaaacaaatcgataattcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttc 371078  T
Q  214 tcaactactcatgggtgaactcgaagtttctctaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggcc 313  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  371077 tcaactactcatgggtgaactcgaagtttctccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtc 370978  T
Q  314 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttcta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370977 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttcta 370878  T
Q  414 gggattgctaatgcatccttgctcagactaaaacttttacgggcatttgggt----------tatggaaataaagattcttggactaaattgttcaatat 503  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| |||||||          ||||||||||||||||||||||||||||||||||||||    
T  370877 gggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatat 370778  T
Q  504 ttctttcgcgacggaatttggtcatgctgattccatcaatcaattttatatttttgaagaggatgaccaattgattttggacttctttgatcaggtatat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  370777 ttctttcgcgacggaatttggtcatgctgattccatcaatcaattttatatttttgaagaggatgaccaattgattttgaacttctttgatcaggtatat 370678  T
Q  604 gtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtctcatatcac 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  370677 gtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttcaacttcattcatctctaatgtctacgttgagagtctcatatcac 370578  T
Q  704 cttgacctatg 714  Q
    |||||||||||    
T  370577 cttgacctatg 370567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 247 - 469
Target Start/End: Complemental strand, 1459800 - 1459578
Alignment:
Q  247 aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat 346  Q
    |||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| ||| |||||||||||||||||||| ||| |||| ||||    
T  1459800 aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat 1459701  T
Q  347 caagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaa 446  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| || |||| |||||||||| || |||     
T  1459700 caagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaat 1459601  T
Q  447 cttttacgggcatttgggttatg 469  Q
    |||||  ||  ||||||||||||    
T  1459600 cttttttggatatttgggttatg 1459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 251 - 469
Target Start/End: Complemental strand, 1471178 - 1470960
Alignment:
Q  251 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 350  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||  ||  |||| ||| ||||||||||||| |||||| ||| |||| ||||||||    
T  1471178 aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag 1471079  T
Q  351 agatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttt 450  Q
    ||||||  ||||||||||||| | ||||||||||||||| | | ||   ||||| |||||||||||||| || ||||||||||||||| || ||| ||||    
T  1471078 agattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttt 1470979  T
Q  451 tacgggcatttgggttatg 469  Q
    |  ||  ||||||||||||    
T  1470978 tttggatatttgggttatg 1470960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 596 - 711
Target Start/End: Complemental strand, 1453737 - 1453622
Alignment:
Q  596 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 695  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1453737 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1453638  T
Q  696 catatcaccttgacct 711  Q
    || |||||||| ||||    
T  1453637 cacatcaccttaacct 1453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 596 - 711
Target Start/End: Complemental strand, 1465429 - 1465314
Alignment:
Q  596 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 695  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1465429 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1465330  T
Q  696 catatcaccttgacct 711  Q
    || |||||||| ||||    
T  1465329 cacatcaccttaacct 1465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 251 - 373
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
Q  251 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 350  Q
    ||||||||||||||  ||||| |||||||||||  |||| || | ||  ||  |||||||| ||||||||| ||||||||||  || |||| ||||||||    
T  7565006 aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag 7564907  T
Q  351 agatttcgcagcctgattatggt 373  Q
    |||||| |||||| |||||||||    
T  7564906 agattttgcagccagattatggt 7564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
Q  314 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 371  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  1442291 attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 499
Target Start/End: Original strand, 176354 - 176388
Alignment:
Q  465 ttatggaaataaagattcttggactaaattgttca 499  Q
    |||||||||||||||||||||||||||||||||||    
T  176354 ttatggaaataaagattcttggactaaattgttca 176388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 1453989 - 1453908
Alignment:
Q  357 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 438  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1453908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 1465681 - 1465600
Alignment:
Q  357 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 438  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1465600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 712
Target Start/End: Complemental strand, 7564579 - 7564538
Alignment:
Q  671 cctctaatgtctacgttgagagtctcatatcaccttgaccta 712  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  7564579 cctctaatgtctatgttgagagtctcgtatcaccttgaccta 7564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 712
Target Start/End: Original strand, 176599 - 176634
Alignment:
Q  677 atgtctacgttgagagtctcatatcaccttgaccta 712  Q
    ||||||| ||||||||||||||||||||||||||||    
T  176599 atgtctatgttgagagtctcatatcaccttgaccta 176634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 712
Target Start/End: Complemental strand, 1459355 - 1459316
Alignment:
Q  673 tctaatgtctacgttgagagtctcatatcaccttgaccta 712  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  1459355 tctaatgtctacgcagagagtctcatatcaccttgaccta 1459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 499
Target Start/End: Complemental strand, 1442139 - 1442105
Alignment:
Q  465 ttatggaaataaagattcttggactaaattgttca 499  Q
    |||||||| ||||||||||||||||||||||||||    
T  1442139 ttatggaattaaagattcttggactaaattgttca 1442105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 3926855 - 3926985
Alignment:
Q  251 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 350  Q
    |||||||||||||| || |||||||||| ||||  | || |||||||| |  ||||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  351 agatttcgcagcctgattatggtctagatga 381  Q
    ||||||| | ||| |||| |||||| |||||    
T  3926955 agatttcacggcccgattttggtcttgatga 3926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 713
Target Start/End: Original strand, 3927335 - 3927366
Alignment:
Q  682 tacgttgagagtctcatatcaccttgacctat 713  Q
    ||||||||||||||||||||||||||||||||    
T  3927335 tacgttgagagtctcatatcaccttgacctat 3927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 3927079 - 3927112
Alignment:
Q  465 ttatggaaataaagattcttggactaaattgttc 498  Q
    ||||||||||||| ||||||||||||||||||||    
T  3927079 ttatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
Q  251 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 350  Q
    |||||||||||||| ||||||||||||| ||||  |||| || ||||  || ||  ||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  351 agatttcgcagcctgattatggtctagatgaacc 384  Q
     |||| |||| || || |||||||||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaacc 55419711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 711
Target Start/End: Original strand, 55419967 - 55420048
Alignment:
Q  630 aaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtctcatatcaccttgacct 711  Q
    ||||| |||| |||||||| |||||| ||| | ||| |||| ||||| ||||||| |||| ||||| |||||||||||||||    
T  55419967 aaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcaccttgacct 55420048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 497
Target Start/End: Original strand, 55419802 - 55419834
Alignment:
Q  465 ttatggaaataaagattcttggactaaattgtt 497  Q
    |||||||||||||||||||||||||||||||||    
T  55419802 ttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 508
Target Start/End: Complemental strand, 22672157 - 22672115
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatatttctt 508  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
T  22672157 tatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 508
Target Start/End: Original strand, 2442060 - 2442102
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatatttctt 508  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  2442060 tatggaaataaagattcttggactaaattgttcactctttctt 2442102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 989420 - 989459
Alignment:
Q  469 ggaaataaagattcttggactaaattgttcaatatttctt 508  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  989420 ggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 504
Target Start/End: Complemental strand, 4142164 - 4142126
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatatt 504  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  4142164 tatggaaataaagagtcttggactaaattgttcactatt 4142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 508
Target Start/End: Complemental strand, 4157974 - 4157932
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatatttctt 508  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  4157974 tatggaaataaagagtcttggactaaattgttcactatctctt 4157932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 1931183 - 1931142
Alignment:
Q  467 atggaaataaagattcttggactaaattgttcaatatttctt 508  Q
    ||||||||||||| || |||||||||||||||| ||||||||    
T  1931183 atggaaataaagactcctggactaaattgttcactatttctt 1931142  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 499
Target Start/End: Original strand, 6538855 - 6538888
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttca 499  Q
    ||||||||||||||||||||||||||||||||||    
T  6538855 tatggaaataaagattcttggactaaattgttca 6538888  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
Q  311 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 372  Q
    |||||| |||||||| |||| |  ||||||| ||||||||||||||| ||||||||||||||    
T  25478730 gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg 25478791  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
Q  311 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 372  Q
    |||||| |||||||| |||| | ||||||||  |||||||| ||||| ||||||||||||||    
T  25869364 gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg 25869303  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 505
Target Start/End: Complemental strand, 23766892 - 23766853
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatattt 505  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23766892 tatggaaataaagagtcttggactaaattgttcactattt 23766853  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 505
Target Start/End: Complemental strand, 23816740 - 23816701
Alignment:
Q  466 tatggaaataaagattcttggactaaattgttcaatattt 505  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23816740 tatggaaataaagagtcttggactaaattgttcactattt 23816701  T

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