View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_10 (Length: 255)
Name: NF18405_low_10
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 38984671 - 38984510
Alignment:
| Q |
83 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc |
182 |
Q |
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| T |
38984671 |
gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc |
38984572 |
T |
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| Q |
183 |
ctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
245 |
Q |
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| T |
38984571 |
ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatg |
38984510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 10583134 - 10582937
Alignment:
| Q |
46 |
tacttggcgatgtctttgggaaactctttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc |
145 |
Q |
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| T |
10583134 |
tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc |
10583037 |
T |
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| Q |
146 |
tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
245 |
Q |
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| T |
10583036 |
tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatg |
10582937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 357020 - 356911
Alignment:
| Q |
136 |
tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacg |
235 |
Q |
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| T |
357020 |
ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg |
356921 |
T |
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| Q |
236 |
ggtgatgatg |
245 |
Q |
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|||| ||||| |
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| T |
356920 |
ggtgttgatg |
356911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 50249155 - 50249232
Alignment:
| Q |
168 |
aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
245 |
Q |
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| T |
50249155 |
aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatg |
50249232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 16465650 - 16465542
Alignment:
| Q |
137 |
ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgg |
236 |
Q |
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| T |
16465650 |
ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga |
16465551 |
T |
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| Q |
237 |
gtgatgatg |
245 |
Q |
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| T |
16465550 |
gtgatgatg |
16465542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
| Q |
83 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt |
140 |
Q |
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| T |
50248348 |
gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt |
50248405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 6762552 - 6762618
Alignment:
| Q |
90 |
aattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttt |
156 |
Q |
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| T |
6762552 |
aattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaacccttt |
6762618 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 1265396 - 1265451
Alignment:
| Q |
190 |
actaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
245 |
Q |
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| T |
1265396 |
actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatg |
1265451 |
T |
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