View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_11 (Length: 250)
Name: NF18405_low_11
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35933187 - 35933426
Alignment:
| Q |
1 |
ttgaaagttcaaactaaattttgttattagaatctaacttgtagattttgcatagtgcatttcaaggaagtaaaattgaaacatggagcatgcttagaag |
100 |
Q |
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| T |
35933187 |
ttgaaagttcaaactaaattttgttattacaatctaacttgtcgattttgcatagtgcatttcaaggaagtaaaattgaaacatggagcatgcttagaag |
35933286 |
T |
|
| Q |
101 |
ttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttggaacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933287 |
ttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttggaacaag |
35933386 |
T |
|
| Q |
201 |
atgtcctgctcctcttactgtcacaaatgtcaatcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35933387 |
atgtcctgctcctcttactgtcacaaatgtcaatcctttg |
35933426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 35908998 - 35909236
Alignment:
| Q |
2 |
tgaaagttcaaactaaat-tttgttattagaatctaacttgtagattttgcata--gtgcattt----caaggaagtaaaattgaaacatggagcatgct |
94 |
Q |
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|||||||||||||||| | ||| ||||| ||||||||| |||||||||||| | |||||||| || ||||||||| |||||||| ||| |||||| |
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| T |
35908998 |
tgaaagttcaaactaattctttaatattacaatctaactagtagattttgcacaaagtgcatttatttcatggaagtaaatttgaaacaaggatcatgct |
35909097 |
T |
|
| Q |
95 |
tagaagttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttgg |
194 |
Q |
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| T |
35909098 |
tagaa-------ccaattaatttgatggtgaactaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttgg |
35909190 |
T |
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| Q |
195 |
aacaagatgtcctgctcctcttactgtcacaaatgtcaatcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35909191 |
aacaagatgtcctgctcctcttactgtcacaaatgtcaatcctttg |
35909236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35913397 - 35913633
Alignment:
| Q |
1 |
ttgaaagttcaaactaaattttgtt--attagaatctaacttgtagattttgcatag--tgcatttcaaggaagtaaaattgaaacatggagcatgctta |
96 |
Q |
| |
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||||||||||||||||| |||| || |||| ||||||||| ||||||| |||| || ||||||||||||||||||| ||||||||| || |||||| | |
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| T |
35913397 |
ttgaaagttcaaactaattttttttttattacaatctaactagtagattatgcacagagtgcatttcaaggaagtaaatttgaaacattgatcatgctca |
35913496 |
T |
|
| Q |
97 |
gaagttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttggaa |
196 |
Q |
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||| ||| ||| ||||||||||||| |||| |||| ||||||| ||||||||||| |||| ||||| || | ||| || ||||||||||||| |
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| T |
35913497 |
gaa-------ccctttaatttgatggtgaagcaggaggcaggattccatataggaatgatgagatcaaagtcaaagcacgttcaggttgccagcttggaa |
35913589 |
T |
|
| Q |
197 |
caagatgtcctgctcctcttactgtcacaaatgtcaatcctttg |
240 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35913590 |
caagatgtcctgctcctcttactgtaacaaatgtcaatcctttg |
35913633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35926367 - 35926605
Alignment:
| Q |
1 |
ttgaaagttcaaactaaattttgtt-attagaatctaacttgtagattttgcata--gtgcatttcaaggaagtaaaattgaaacatggagcatgcttag |
97 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| | |||||||||||||||||||| ||||| || | ||||||||| |
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| T |
35926367 |
ttgaaagttcaaactgaattttgtttattacaatctaactagtagattttgcacaaagtgcatttcaaggaagtaaatctgaaaagtgaatcatgcttag |
35926466 |
T |
|
| Q |
98 |
aagttagaacccattattttgatggtgaa---gtaggaagcagacttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttgg |
194 |
Q |
| |
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|| | |||| |||||||||||| | || | |||| |||||||||||||||||||| |||| ||||| || | ||| || ||||||||||| |
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| T |
35926467 |
aaa-------caattagtttgatggtgaaacagaagcaggcaggcttccatagaggaatgatgagatcaaagtcaaagcacgttcgggttgccagcttgg |
35926559 |
T |
|
| Q |
195 |
aacaagatgtcctgctcctcttactgtcacaaatgtcaatcctttg |
240 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
35926560 |
aacaagatgtcctgctcctcttactgtaacaaatgttaatcctttg |
35926605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 35919847 - 35920026
Alignment:
| Q |
54 |
agtgcatttcaaggaagtaaaattgaaacatggagcatgcttagaagttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaat |
153 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||| ||| ||||||||| || || |||||| || | |||| |||||||||||||| |
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| T |
35919847 |
agtgcatttctaggaagtaaatttgaaacatggatcatgct--gaa-----aacccattaattcgacggtgaaccagaaggcaggattccatagaggaat |
35919939 |
T |
|
| Q |
154 |
gatgatatcattgtcaatgccctttctggctgccagcttggaacaagatgtcctgctcctcttactgtcacaaatgtcaatcctttg |
240 |
Q |
| |
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||||| |||| ||||| || | ||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
35919940 |
gatgagatcaaagtcaaagcacgttcaggttgccagcttggaacaagatgtcctgctcctctcactgtaacaaatgtcaatcctttg |
35920026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 35938985 - 35939085
Alignment:
| Q |
140 |
ttccatagaggaatgatgatatcattgtcaatgccctttctggctgccagcttggaacaagatgtcctgctcctcttactgtcacaaatgtcaatccttt |
239 |
Q |
| |
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||||||||||||||||||| |||| ||||| || | ||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
35938985 |
ttccatagaggaatgatgagatcaaagtcaaagcacgttcaggttgccagcttggaacaagatgtcctgctcctctcactgtaacaaatgttaatccttt |
35939084 |
T |
|
| Q |
240 |
g |
240 |
Q |
| |
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| |
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| T |
35939085 |
g |
35939085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 38517992 - 38517889
Alignment:
| Q |
54 |
agtgcatttcaaggaagtaaaattgaaacatggagcatgcttagaagttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaat |
153 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||| ||||||||||| |||||||| ||||||||||| | |||| || |||||||||||||||| |
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| T |
38517992 |
agtgcatttcaaggaagtaaatttgaatcacggaccatgcttagaa------acccattaatttgatggtgaggcaggagacaaacttccatagaggaat |
38517899 |
T |
|
| Q |
154 |
gatgatatca |
163 |
Q |
| |
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||||| |||| |
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| T |
38517898 |
gatgagatca |
38517889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 2558672 - 2558789
Alignment:
| Q |
31 |
aatctaacttgtagattttgcata--gtgcatttcaaggaagtaaaattgaaacatggagcatgcttagaagttagaacccattattttgatggtgaagt |
128 |
Q |
| |
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||||||||| ||||||||||| | |||||||| ||||||||||| |||||||||| | |||||||||| ||||||||| |||| |||||| | |
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|
| T |
2558672 |
aatctaactaatagattttgcacaaagtgcatttgaaggaagtaaatttgaaacatgcatcatgcttaga------aacccattaatttgttggtgaggc |
2558765 |
T |
|
| Q |
129 |
aggaagcagacttccatagaggaa |
152 |
Q |
| |
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|||||||| ||||||| ||||||| |
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|
| T |
2558766 |
aggaagcaaacttccaaagaggaa |
2558789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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