View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_12 (Length: 244)
Name: NF18405_low_12
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 54727913 - 54728063
Alignment:
| Q |
90 |
agatctcacataaaatggtgaaattaatataggtttcaaccaattgaagaatgagtattagagagg----------gagtgt-ttcaaacatagtaacat |
178 |
Q |
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| T |
54727913 |
agatctcacataaaatggtgaaattaatataggtttcaaccaattgaagaatgagtattagagaggatgctagaaagagagtgttcaaacatagtaacat |
54728012 |
T |
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| Q |
179 |
ttatctccttctatgaccatcaaggccacgttaattaatatagatcttgat |
229 |
Q |
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| T |
54728013 |
ttatctccttctataaccatcaaggccacgttaattaatatagatcttgat |
54728063 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 5302684 - 5302725
Alignment:
| Q |
188 |
tctatgaccatcaaggccacgttaattaatatagatcttgat |
229 |
Q |
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| T |
5302684 |
tctataaccatcaaggccacgttaattaatatagatcttgat |
5302725 |
T |
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