View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_3 (Length: 352)
Name: NF18405_low_3
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 45063215 - 45063538
Alignment:
| Q |
19 |
caatcggtataggtccaacctgatgtcaacaaaattttcatgattacatgctcttataaaataaagtatcgactatcgagtaattatgttcgaaaaacag |
118 |
Q |
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| T |
45063215 |
caatcggtataggtccaacctgatgtcaacaaaattttcatgattacatgctcttataaaataaagtatcgactatcgagtaattatgttcgaaaaacag |
45063314 |
T |
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| Q |
119 |
gnnnnnnnnntaaaagaataagacttacaataaactcaacttcagcatgttcttttcctttgaacagtctggtagtctgttcaattaagacaatagtcag |
218 |
Q |
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| T |
45063315 |
gaaaaataaataaaagaataagacttacaataaactcaacttcagcatgttcttttcctttgaacagtctggtagtctgttcaattaagacaatagtcag |
45063414 |
T |
|
| Q |
219 |
ttattgatatagc--tatggagctttcaacaagggaggataaagaataagcctactgcatgcctctaacagattccatgttttatttgttttcttaacta |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063415 |
ttattgatatagctatatggagctttcaacaagggaggataaagaataaacctactgcatgcctctaacagattccatgttttatttgttttcttaacta |
45063514 |
T |
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| Q |
317 |
taattcatgacaattctctgccta |
340 |
Q |
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|||||||||||||||||||||||| |
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| T |
45063515 |
taattcatgacaattctctgccta |
45063538 |
T |
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