View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18405_low_4 (Length: 330)

Name: NF18405_low_4
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18405_low_4
NF18405_low_4
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-315)||(207049-207366)
[»] chr5 (7 HSPs)
chr5 (16-135)||(32421932-32422051)
chr5 (16-108)||(5465470-5465561)
chr5 (16-115)||(6095331-6095430)
chr5 (16-111)||(5970020-5970115)
chr5 (17-103)||(23647622-23647708)
chr5 (17-103)||(23810865-23810951)
chr5 (67-99)||(15368375-15368407)
[»] chr3 (7 HSPs)
chr3 (1-108)||(32111987-32112093)
chr3 (17-107)||(40339220-40339310)
chr3 (59-115)||(41115405-41115461)
chr3 (59-135)||(49829099-49829175)
chr3 (16-47)||(835927-835958)
chr3 (16-71)||(25129539-25129594)
chr3 (59-109)||(36364871-36364921)
[»] chr2 (7 HSPs)
chr2 (18-115)||(36306951-36307048)
chr2 (20-107)||(21234529-21234616)
chr2 (16-106)||(4007202-4007292)
chr2 (16-78)||(10918579-10918641)
chr2 (16-109)||(42650263-42650356)
chr2 (67-99)||(5533082-5533114)
chr2 (52-128)||(43969672-43969748)
[»] chr7 (3 HSPs)
chr7 (16-107)||(38453344-38453435)
chr7 (11-115)||(35105144-35105248)
chr7 (18-137)||(26984483-26984601)
[»] chr4 (6 HSPs)
chr4 (18-135)||(47514208-47514325)
chr4 (16-202)||(11302293-11302482)
chr4 (16-115)||(29779054-29779153)
chr4 (16-78)||(7206305-7206367)
chr4 (16-109)||(8849525-8849617)
chr4 (59-115)||(17898171-17898227)
[»] chr1 (2 HSPs)
chr1 (16-78)||(3887448-3887510)
chr1 (38-135)||(30220232-30220329)
[»] chr6 (2 HSPs)
chr6 (18-109)||(34800817-34800907)
chr6 (16-115)||(34805259-34805358)


Alignment Details
Target: scaffold0009 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 207049 - 207366
Alignment:
Q  1 tttggatttattttttgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  207049 tttggatttattttttgtaaaagtggatttaacaataaattttaggctacaattaaaagtagaagccaaaagctacaactagtagcttcaagtagaatta 207148  T
Q  101 attctacaagcaaaagtagttcttctttaaatcattcgagggaggaaaaatctgttcttcaacctctagaatcaattttta--ctccaaaattgaaacca 198  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| ||  |||||||||||||||||    
T  207149 attctacaagcaaaagtagttcttctttaaatcattcgagggtgggaaaatccgttcttcaacctctagaataaatttgtactctccaaaattgaaacca 207248  T
Q  199 aacacacttaatggttttactgttgttagtttattac-ttataataaactgtgttttgtggaacttcagttgtgcttatttgtttctttttgacttttgc 297  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  207249 aacacacttaatggttttactgttgttagtttattactttattattaactgtgttttgtggaacttcatttgtgcttatttttttctttttgacttttgc 207348  T
Q  298 atcaatgttttactctgt 315  Q
    ||| ||||||||||||||    
T  207349 atccatgttttactctgt 207366  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 32421932 - 32422051
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    |||||||||| ||||| |||| ||||| |||||| ||||||  |||||||||||| ||||||| | ||||||||||| ||||| ||||||||||| ||||    
T  32421932 tgtaaaagtgaatttatcaatgaatttaaggctaaaatcaattgtagaagccaaatgctacaaattgtagcttcaaggagaatcaattctacaagtaaaa 32422031  T
Q  116 gtagttcttctttaaatcat 135  Q
     || || | |||||||||||    
T  32422032 ttaattttactttaaatcat 32422051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 5465470 - 5465561
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctaca 108  Q
    ||||||| | |||||| |||| ||||| |||||| | |||| |||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  5465470 tgtaaaaattgatttatcaatgaatttaaggcta-attcaacagtagaagccaaaaactacaaattgtagcttcaagtagaattaattctaca 5465561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 6095331 - 6095430
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    ||||||| || |||||||||| |||||  ||||| ||| ||| ||||||||||||| |||||| | |||||||| |||||||| |||||||||| |||||    
T  6095331 tgtaaaaatgaatttaacaatgaatttatggctaaaataaaatgtagaagccaaaaactacaaatcgtagcttcgagtagaataaattctacaatcaaaa 6095430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 5970020 - 5970115
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagc 111  Q
    ||||| |||||||||||| |||||||| |||||| ||||||  |||||||||||||||| ||| |  || |||||||||||||  ||||| |||||    
T  5970020 tgtaatagtggatttaaccataaatttaaggctaaaatcaactgtagaagccaaaagctgcaaattctaacttcaagtagaatccattctgcaagc 5970115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 23647708 - 23647622
Alignment:
Q  17 gtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaatt 103  Q
    ||||||||||||||| | |||||||| ||| || ||||||  ||||||| ||||||  |||| | ||||||||||||||||| ||||    
T  23647708 gtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagtagaatcaatt 23647622  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23810865 - 23810951
Alignment:
Q  17 gtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaatt 103  Q
    ||||||||||||||| | |||||||| ||| || ||||||  ||||||| ||||||  |||| | ||||||||||||||||| ||||    
T  23810865 gtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagtagaatcaatt 23810951  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 15368407 - 15368375
Alignment:
Q  67 caaaagctacaactagtagcttcaagtagaatt 99  Q
    |||||| ||||||||||||||||||||||||||    
T  15368407 caaaagttacaactagtagcttcaagtagaatt 15368375  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 32112093 - 32111987
Alignment:
Q  1 tttggatttattttttgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaatta 100  Q
    ||||||||||||| | |||||||||||||||||||| ||||| || ||| ||||||   || |||||||||||||||| | ||||||||||||||||| |    
T  32112093 tttggatttatttat-gtaaaagtggatttaacaatgaatttaagtctaaaatcaattctaaaagccaaaagctacaaattgtagcttcaagtagaatca 32111995  T
Q  101 attctaca 108  Q
    ||||||||    
T  32111994 attctaca 32111987  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 40339310 - 40339220
Alignment:
Q  17 gtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctac 107  Q
    ||||||||| ||| |||||||||||  |||||| ||||||  |||||||| ||||||||||| | ||||||||||||||||| ||||||||    
T  40339310 gtaaaagtgaattgaacaataaattcaaggctaaaatcaattgtagaagcaaaaagctacaaattgtagcttcaagtagaatcaattctac 40339220  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 41115405 - 41115461
Alignment:
Q  59 gtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    |||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||    
T  41115405 gtagaagccaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaa 41115461  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 49829099 - 49829175
Alignment:
Q  59 gtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaagtagttcttctttaaatcat 135  Q
    |||||||| || | |||||| | ||||||||||||||||| |||| ||||||||||| |  |||| |||||||||||    
T  49829099 gtagaagctaagaactacaaattgtagcttcaagtagaatcaattgtacaagcaaaattgattctactttaaatcat 49829175  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 835958 - 835927
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggc 47  Q
    ||||||||||||||||||||||||||||||||    
T  835958 tgtaaaagtggatttaacaataaattttaggc 835927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 25129539 - 25129594
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaa 71  Q
    ||||||||||||||||||||||||||  |||||| ||||||   ||||||||||||    
T  25129539 tgtaaaagtggatttaacaataaattggaggctaaaatcaattatagaagccaaaa 25129594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 36364921 - 36364871
Alignment:
Q  59 gtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaa 109  Q
    |||||||||||||||||||| | ||| ||| ||||||||| ||||||||||    
T  36364921 gtagaagccaaaagctacaaattgtaacttgaagtagaatcaattctacaa 36364871  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 36307048 - 36306951
Alignment:
Q  18 taaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    ||||||||||||||||||||||||| |||||| ||||||  ||||||| ||||||||| || | |||||| |||||||||| |||| ||||| |||||    
T  36307048 taaaagtggatttaacaataaatttaaggctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaa 36306951  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 21234529 - 21234616
Alignment:
Q  20 aaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctac 107  Q
    ||||| ||||| |||||||| || ||  |||| ||||  |||||||||||||||||||| |  |||||||||||||||| ||||||||    
T  21234529 aaagtcgatttgacaataaaattaagattacagtcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattctac 21234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 4007202 - 4007292
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattcta 106  Q
    |||||||||||||||| |||| ||||| |||||| ||||||  | ||||| ||||| |||||| | ||| ||| ||||||||| |||||||    
T  4007202 tgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgcagaaggcaaaaactacaaattgtaacttaaagtagaatcaattcta 4007292  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 10918641 - 10918579
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaa 78  Q
    ||||||||||||||| ||||||||||| |||||| || ||   ||||||||||||||||||||    
T  10918641 tgtaaaagtggatttgacaataaatttaaggctaaaaccatttgtagaagccaaaagctacaa 10918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 42650356 - 42650263
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaa 109  Q
    ||||||||| |||||| |||| ||| | |||||| ||||||  | ||||| |||||||||||| |  || ||||||||||||| ||| ||||||    
T  42650356 tgtaaaagttgatttagcaattaatctaaggctaaaatcaattggagaagacaaaagctacaaattataacttcaagtagaatcaatcctacaa 42650263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 5533082 - 5533114
Alignment:
Q  67 caaaagctacaactagtagcttcaagtagaatt 99  Q
    |||||||||||| ||||||||||||||||||||    
T  5533082 caaaagctacaaatagtagcttcaagtagaatt 5533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 43969748 - 43969672
Alignment:
Q  52 atcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaagtagttcttcttt 128  Q
    ||||| ||||||||| ||||||||||| |  ||| |||||||||||| || | ||||||||||| || |||| ||||    
T  43969748 atcaagagtagaagcaaaaagctacaaattctagtttcaagtagaatcaaatatacaagcaaaattaattctccttt 43969672  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 38453435 - 38453344
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctac 107  Q
    |||||||||||||||| |||| ||||| |||||| ||||||  ||||||| |||||| ||||| ||| ||||||||||||||| ||||||||    
T  38453435 tgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgtagaagtcaaaagttacaaatagcagcttcaagtagaatcaattctac 38453344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 35105248 - 35105144
Alignment:
Q  11 ttttttgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaag 110  Q
    |||| |||||||||||||||| | || ||||| |||||| | ||||  |||||| |||||| |||||| |  |||||||||||||||| |||||||||||    
T  35105248 ttttatgtaaaagtggatttatcgatgaatttaaggctaaagtcaattgtagaaaccaaaaactacaaattatagcttcaagtagaatcaattctacaag 35105149  T
Q  111 caaaa 115  Q
    |||||    
T  35105148 caaaa 35105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 26984483 - 26984601
Alignment:
Q  18 taaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaagt 117  Q
    ||||||||||||||||||||||||| ||| || ||| ||   || |||||||| ||||||| |  |||||||||||||||| |||||||||| |||||      
T  26984483 taaaagtggatttaacaataaatttaagggtaaaattaatcataaaagccaaa-gctacaaatcttagcttcaagtagaatcaattctacaaacaaaatc 26984581  T
Q  118 agttcttctttaaatcattc 137  Q
    |  ||| |||||||||||||    
T  26984582 aagtctactttaaatcattc 26984601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 47514208 - 47514325
Alignment:
Q  18 taaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaagt 117  Q
    ||||||||||||||||||||||||| |||||| |||  |  ||||||| ||||||||| || | ||| ||||||||| ||| ||||||||||| ||||      
T  47514208 taaaagtggatttaacaataaatttaaggctagaattcattgtagaaggcaaaagctataaattgtaacttcaagtaaaatcaattctacaagaaaaatc 47514307  T
Q  118 agttcttctttaaatcat 135  Q
    | |||| |||||||||||    
T  47514308 aattctactttaaatcat 47514325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 11302482 - 11302293
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagt--agcttcaagtagaattaattctacaagcaa 113  Q
    |||||||||| |||| || |||||||| | |||| ||||||  ||||||||||||||||||||  | |  ||||||||||||||| ||||| ||||||||    
T  11302482 tgtaaaagtgaatttgacgataaatttaatgctaaaatcaagtgtagaagccaaaagctacaaaaattctagcttcaagtagaatcaattccacaagcaa 11302383  T
Q  114 aagtagttcttctttaaatcattcgagggaggaaaaatctgttcttcaacctctagaatcaattttta--ctccaaaattgaaaccaaaca 202  Q
    ||  |  ||||| |||||||| || |   | || |||||  |||| |||| ||||||||||||||| |  |||||||||||||||||||||    
T  11302382 aaccaaatcttcattaaatca-tccaaacatgataaatcaattctacaacttctagaatcaattttgactctccaaaattgaaaccaaaca 11302293  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 29779054 - 29779153
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    ||||||||||||||  ||||||| ||| || ||| ||||||  | |||||  ||||||||||| |  |||||||||||||||| ||||||||||||||||    
T  29779054 tgtaaaagtggattcgacaataactttaagcctaaaatcaattgcagaagtgaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaa 29779153  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 7206367 - 7206305
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaa 78  Q
    ||||||| | ||||||||||||||||| |||||| ||||||  ||||||||||||||||||||    
T  7206367 tgtaaaactagatttaacaataaatttaaggctaaaatcaattgtagaagccaaaagctacaa 7206305  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 8849525 - 8849617
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaa 109  Q
    ||||||| ||||||||||||||||||| |||  | ||||||  || |||||||||||||| || |  |||||| |||||| |||||||||||||    
T  8849525 tgtaaaaatggatttaacaataaatttaagggcaaaatcaattgtggaagccaaaagctataaattctagctt-aagtaggattaattctacaa 8849617  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 17898171 - 17898227
Alignment:
Q  59 gtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    ||||||||||||| ||| |  | || |||||||||||||| ||||||||||||||||    
T  17898171 gtagaagccaaaaactatatattgttgcttcaagtagaatcaattctacaagcaaaa 17898227  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3887448 - 3887510
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaa 78  Q
    ||||||||||||||||| ||||||||| |||||| ||||||  ||||||||||||||||||||    
T  3887448 tgtaaaagtggatttaataataaatttaaggctaaaatcaattgtagaagccaaaagctacaa 3887510  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 30220232 - 30220329
Alignment:
Q  38 aattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaagtagttcttctttaaatcat 135  Q
    ||||| ||| || ||||||  |||||||| || | |||||| |  |||||||||||||||| |||| |||||||||||  | |||| |||||||||||    
T  30220232 aatttaagggtaaaatcaattgtagaagcaaagaactacaaattatagcttcaagtagaatcaattatacaagcaaaatcaattctactttaaatcat 30220329  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 34800817 - 34800907
Alignment:
Q  18 taaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaa 109  Q
    ||||||||||||| ||||||||||| ||| || ||||||  ||||||||||||| |||||| |  |||||||||||  ||| ||||||||||    
T  34800817 taaaagtggatttgacaataaatttaaggttaaaatcaagcgtagaagccaaaa-ctacaaattctagcttcaagtgaaatcaattctacaa 34800907  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 34805259 - 34805358
Alignment:
Q  16 tgtaaaagtggatttaacaataaattttaggctacaatcaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 115  Q
    ||||||||||||||| || |||| ||| ||| || ||||||  ||| |||| ||||||||||| |  ||| |||||||||||||||||| |||| |||||    
T  34805259 tgtaaaagtggatttgactataattttaaggttaaaatcaagtgtaaaagctaaaagctacaaattatagtttcaagtagaattaattccacaaacaaaa 34805358  T

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