View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_7 (Length: 276)
Name: NF18405_low_7
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26652807 - 26653063
Alignment:
| Q |
1 |
ttgggatgaaatatatataaattctgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652807 |
ttgggatgaaatatatataaattctgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattttgaa |
26652906 |
T |
|
| Q |
101 |
gacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagcactgtcatacatgagatgtgagtgagtaatgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652907 |
gacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagcactgtcatacatgagatgtgagtgagtaatgtta |
26653006 |
T |
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| Q |
201 |
tgctttgcaactcggttgtactatggcgttgctacattgggcataaacctttggcag |
257 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26653007 |
tgctttgcaactcagttgtactatggcgttgctacattgggcataaacctttggcag |
26653063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26758775 - 26759031
Alignment:
| Q |
1 |
ttgggatgaaatatatataaattctgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattttgaa |
100 |
Q |
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| T |
26758775 |
ttgggatgaaatatatataaattctgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattttgaa |
26758874 |
T |
|
| Q |
101 |
gacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagcactgtcatacatgagatgtgagtgagtaatgtta |
200 |
Q |
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| T |
26758875 |
gacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagcactgtcatacatgagatgtgagtgagtaatgtta |
26758974 |
T |
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| Q |
201 |
tgctttgcaactcggttgtactatggcgttgctacattgggcataaacctttggcag |
257 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26758975 |
tgctttgcaactcagttgtactatggcgttgctacattgggcataaacctttggcag |
26759031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 27339372 - 27339301
Alignment:
| Q |
25 |
tgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattt |
96 |
Q |
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| T |
27339372 |
tgtatggctaattaagcattcaacataacaacctacactaataattgtgtgtgcatggttaattaatcattt |
27339301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 27400112 - 27400041
Alignment:
| Q |
25 |
tgtatggctaattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattt |
96 |
Q |
| |
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| T |
27400112 |
tgtatggctaattaagcattcaacataacaacctacactaataattgtgtgtgcatggttaattaatcattt |
27400041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 27339285 - 27339211
Alignment:
| Q |
93 |
attttgaagacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagca |
167 |
Q |
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| T |
27339285 |
attttgaagacatagttgatcaccaatgacatgtaaatccatttttaaagaaaaaatttgactctgtaataagca |
27339211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 27400025 - 27399951
Alignment:
| Q |
93 |
attttgaagacatagttggttaccaatgacacgcaaatccatttttaaagcaaaaatttgattgtgtattaagca |
167 |
Q |
| |
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| T |
27400025 |
attttgaagacatagttgatcaccaatgacatgtaaatccatttttaaagaaaaaatttgactctgtaataagca |
27399951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 26654940 - 26654983
Alignment:
| Q |
104 |
atagttggttaccaatgacacgcaaatccatttttaaagcaaaa |
147 |
Q |
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| T |
26654940 |
atagttggttaccaatgacatgcaaatccatttttaaagcaaaa |
26654983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 26760910 - 26760953
Alignment:
| Q |
104 |
atagttggttaccaatgacacgcaaatccatttttaaagcaaaa |
147 |
Q |
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| T |
26760910 |
atagttggttaccaatgacatgcaaatccatttttaaagcaaaa |
26760953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 27586702 - 27586649
Alignment:
| Q |
187 |
agtgagtaatgttatgctttgcaactcggttgtactatggcgttgctacattgg |
240 |
Q |
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||||||||||| |||||||||||| || |||||||| |||| |||||||||||| |
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| T |
27586702 |
agtgagtaatgatatgctttgcaattcagttgtactgtggcattgctacattgg |
27586649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 26654846 - 26654909
Alignment:
| Q |
33 |
taattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattt |
96 |
Q |
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|||||||||||| || || ||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
26654846 |
taattaagcattcaatattgcaacttacactaataattgtgtgtgcatggttaattaatcattt |
26654909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 26760816 - 26760879
Alignment:
| Q |
33 |
taattaagcattaaacataataacctacactaataattgtgtgtgaacggttaattaatcattt |
96 |
Q |
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|||||||||||| || || ||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
26760816 |
taattaagcattcaatattgcaacttacactaataattgtgtgtgcatggttaattaatcattt |
26760879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 27712663 - 27712615
Alignment:
| Q |
189 |
tgagtaatgttatgctttgcaactcggttgtactatggcgttgctacat |
237 |
Q |
| |
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||||||||| |||||||||||| || |||||||| |||| ||||||||| |
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| T |
27712663 |
tgagtaatgatatgctttgcaattcagttgtactgtggcattgctacat |
27712615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 5083238 - 5083292
Alignment:
| Q |
187 |
agtgagtaatgttatgctttgcaactcggttgtactatggcgttgctacattggg |
241 |
Q |
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||||||||||| ||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
5083238 |
agtgagtaatgatatgctttgcagctcagttgtactgtggcgttgctacattggg |
5083292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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