View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18405_low_8 (Length: 273)
Name: NF18405_low_8
Description: NF18405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18405_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 7008670 - 7008417
Alignment:
| Q |
19 |
ttttaaaaccatattcgagaagatttaaactttatgctttaaaattatgtggttgaactctttacatataaatatacacgtgaattgttgttgagtttga |
118 |
Q |
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| T |
7008670 |
ttttaaaaccatattcgagaagatttaaactttatgctttaaaattatgtggtcgaactctttgcatataaatatacacgtgaattgttgttgagtatga |
7008571 |
T |
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| Q |
119 |
ctcataatttactcataagcgagaaaaacactcgagcaggaaagcattgtatgcacgggcatgatgagttgcatcaacacttttgatagaaggtgtgtcc |
218 |
Q |
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| T |
7008570 |
ctcatagtttactcataagcgagaaaagtgctcgagcaggcaagcattgtacgcacgtgcatgatgagttgc-tcaacacttttgattgaaggtgtgtcc |
7008472 |
T |
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| Q |
219 |
cgttgtttgacactgacacaacaccaacacttgattacattgaattatgtcattt |
273 |
Q |
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| T |
7008471 |
cattgtttgacactgacagaacaccaacacttgattacattgaattatgtcattt |
7008417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 29049947 - 29049906
Alignment:
| Q |
232 |
tgacacaacaccaacacttgattacattgaattatgtcattt |
273 |
Q |
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| T |
29049947 |
tgacacaacaccaacacatgattacattgaattatgtaattt |
29049906 |
T |
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