View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_1 (Length: 840)
Name: NF18406_high_1
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 12456254 - 12455764
Alignment:
| Q |
18 |
atattggtgtcccttagaaggcatcataatgaaattgtacactgatt-gctgtaatgttagcttcattggaatttggaagcagctatgattacaaatgtt |
116 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12456254 |
atattagtgtctcttagaaggcatcataatgaaattgtacactgatttgctgtaatgttagcttcattggaatttggaagcagctacgattacaaatgtt |
12456155 |
T |
|
| Q |
117 |
tcactgatattagtgtcccttaacaaaacagtttcactgcaaccctattttttctattttagtttcctttcattaatgttggattataaatgtttcggac |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12456154 |
tcactgatattagtgtcccttaccaaaacagtttcactgcaaccctattttttctattttagtttcctttcattgatgttggattataaatgtttcggac |
12456055 |
T |
|
| Q |
217 |
tagcccatgacccatccgaactagatttctgcactacagacccaacccc-tgagcaaaacgtcactgaagatcaacgacagcatgatctcaactaaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12456054 |
tagcccatgacccatccgaactagatttctgcactacagacccaactccatgagcaaaacgtcactgaagatcaacgactgcatgatctcaactaaacat |
12455955 |
T |
|
| Q |
316 |
tgattcgcatatcacggcgatatacattcctacttataactttctcaacagactttcccaccattttacctcggcagttcagttgtattaggactttcct |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
12455954 |
tgattcgcatatcacggcgatatacattccgacttataactttctcaacagactttcccaccattttacctgggcagttcaattgtattaggactttcct |
12455855 |
T |
|
| Q |
416 |
tccaccggaagcaaggtgcccactattcatcatatctctcactcacctcaaattctagttgactcagagtgttggagtgtgtacgaataca |
506 |
Q |
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| T |
12455854 |
tccaccggaagcaaggtgcccactattcatcatatctctcactcacctcaaattcttgttgactcagagtgttggagtgtgtacgaataca |
12455764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 504 - 829
Target Start/End: Complemental strand, 12455499 - 12455174
Alignment:
| Q |
504 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcgatgaaggtta |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12455499 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcaatgaaggtta |
12455400 |
T |
|
| Q |
604 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
703 |
Q |
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| T |
12455399 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
12455300 |
T |
|
| Q |
704 |
actcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455299 |
actcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc |
12455200 |
T |
|
| Q |
804 |
tctgcttggaaactaaggctctgtgc |
829 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
12455199 |
tctgcttggaaactaaggctctgtgc |
12455174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 743
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
| Q |
687 |
gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc |
743 |
Q |
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||||||||||||||||||||| |||||||||| || ||||| ||||| ||| ||||| |
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| T |
5654501 |
gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc |
5654557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 718
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
| Q |
689 |
ctatgaagcacaaatactcctcggattagg |
718 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
30621753 |
ctatgaagcacaaatactcctcggattagg |
30621782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 687 - 721
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
| Q |
687 |
gactatgaagcacaaatactcctcggattaggagt |
721 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
21211415 |
gactatgaagcacaaacactcctcggattaggagt |
21211381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 718
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
| Q |
689 |
ctatgaagcacaaatactcctcggattagg |
718 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
11596398 |
ctatgaagcacaaatactcctcggattagg |
11596427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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