View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_high_11 (Length: 536)
Name: NF18406_high_11
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 344 - 525
Target Start/End: Complemental strand, 384959 - 384776
Alignment:
| Q |
344 |
ttttaccattacatcacattaaagggctttcagttgaacagtgatagttattatatcctaaacattggtttatgtaagacaggag---atactactcaat |
440 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
384959 |
ttttacaattacatcacattaaagggctttcacttgaacagtgatagttattatatcctaatcattggtttatgtaagacaggaggagata-tactcaat |
384861 |
T |
|
| Q |
441 |
tagccatacccttgttgagacggttgccacattattttgacatttacactctcactgacttgcataactcagtcatacacaggtt |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
384860 |
tagccatacccttgttgagacggttgccacattattttgacatttacactctcactgacttgcataactcagtcatacacaggtt |
384776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 385537 - 385439
Alignment:
| Q |
153 |
actatacagaatagaatgcctcggtaattatttttgtttgaaaaacatggtggcactgagagggttataagcgtaattttgaaaacccttttcgttgac |
251 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
385537 |
actatacagaatagaatgcctaggtaattatttttgtttgaaaaacctggtggcactgagagggttataagcgtaattttgaaaacccttttcgttgac |
385439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 385675 - 385578
Alignment:
| Q |
32 |
agcctcaatgcagtttctaagtttccagatttgacataagattcaattaaagaaacgtatatagtagggggaggcctgtacccataacctcaaggaaa |
129 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
385675 |
agcctcaaagcagtttctaactttccagatttgacataagattcaatcaaagaaacgtatatagtagggggaggcctgtacccataacctcaaggaaa |
385578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38729874 - 38729995
Alignment:
| Q |
1 |
tctgaaccctgcgaatttcatctcgtcccagagcctcaatgcagtttctaagtttccagatttgacataagattcaattaaagaaacgtatatagtaggg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
38729874 |
tctgaaccctgctaatttcatctcgtcccaaagcctcaaagcagtttctaactttccagatttgacataagattcaatcaaagaaacatatatagtaggg |
38729973 |
T |
|
| Q |
101 |
ggaggcctgtacccataacctc |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38729974 |
ggaggcctgtacccataacctc |
38729995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University