View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_13 (Length: 518)
Name: NF18406_high_13
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 47 - 503
Target Start/End: Original strand, 31874175 - 31874632
Alignment:
| Q |
47 |
catattatttatttctttctaaataggccaatagaaaattaatcaaattgcgtgacaaatacctttatactctttacgaagtcggataagcatggtcgta |
146 |
Q |
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| T |
31874175 |
catattatttatttctttctaaatagaccaatagaaaattaatcaaattgcgtgacaaatacctttatactctttacgaagtcggataagcatggtcgta |
31874274 |
T |
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| Q |
147 |
tttgactcagaccgaatagaacaattatcctaagcccnnnnnnntatgtctaaatatcctaaaagatgtggccaagatagtaatccatgtctaacgtaat |
246 |
Q |
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| T |
31874275 |
tttgactcagatcgaagaggacaattatcctaagcccaaaaaaatttgtctaaatatcctaaaagatgtggccaagatagtaatcaatgtctaacgtaat |
31874374 |
T |
|
| Q |
247 |
tatccttattagccaatctattattcaagaaactccaaacaatagaagacacattcgatgaaaccaatttattccaaacaagatctttgtgaatccgtga |
346 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||| |
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| T |
31874375 |
tatccttattagccaatctattattcaagaaattccaaacaatgggagacacattcgatgaaaccaatttatttcaaacaatatcttcgtgaattcgtga |
31874474 |
T |
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| Q |
347 |
ttctaaca-cctcttcctctacatcctaagttagcatttgatacacatatttgattgactcttcactactatgttctccattatttaactaacgcaattg |
445 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
31874475 |
ttctaacaccctcttcctctacatcctaagttagcatttgatacacatctttgattgactcttcactactatgttctccattacttaactaacgcaggtg |
31874574 |
T |
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| Q |
446 |
tattttcggtatttcaatatcttgggtgtgttccggcaaacaatgttaacaaaaagaa |
503 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
31874575 |
tattttcgatatttcaatatcttaggtgtgttccggcaaacaacgttagcaaaaagaa |
31874632 |
T |
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