View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_15 (Length: 496)
Name: NF18406_high_15
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 24566257 - 24566643
Alignment:
| Q |
22 |
cagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgttta |
121 |
Q |
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| T |
24566257 |
cagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgttta |
24566356 |
T |
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| Q |
122 |
tctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaa |
221 |
Q |
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| T |
24566357 |
tctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaa |
24566456 |
T |
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| Q |
222 |
ttgaacatgtcaattatattgattataaacacacagaaaaacaacttgataaaattcagtttcatcaattcaagtgatcgtaatttcataaatcgtatct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24566457 |
ttgaacatgtcaattatattgattataaacacacaggaaaacaacttgataaaattcagtttcatcaattcaagtgatcataatttcataaatcgtatct |
24566556 |
T |
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| Q |
322 |
tgtccatatctgttacccgtcaattgtcaaatcaaatatgttcacgtgatggatacttccataagataaagaaggtaacttgttatg |
408 |
Q |
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| T |
24566557 |
tgtccatatctgttacccgtcaattgtcaaatcaaatatgttcacgtgatggatacttccataagataaagaaggtaacttgttatg |
24566643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 45532703 - 45532545
Alignment:
| Q |
32 |
ttctacactcgtgatacatgcttgataagaaagactat--tgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctc |
129 |
Q |
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| T |
45532703 |
ttctacattcgtgatacatgcttgatatgaaagtctctaatacatgaaagaagcatttcatcacagagaaacttttttagttcaattgtttacctttctc |
45532604 |
T |
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| Q |
130 |
attctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaag |
188 |
Q |
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| T |
45532603 |
attctcaaattataaataattttttaaaatacatatccaatccacatattatgcagaag |
45532545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 44335431 - 44335247
Alignment:
| Q |
66 |
ctattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccat |
165 |
Q |
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| T |
44335431 |
ctattgcatgaaagaagcatttaatcacaaagaagcttttttagtacaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatattcat |
44335332 |
T |
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| Q |
166 |
ccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaattgaacatgtcaattatattgattataaa |
250 |
Q |
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| T |
44335331 |
ctgattcacatatcatgcataagacatcataaaatgtaggtgctggagtgatttaattgaatatattatttatattgattttaaa |
44335247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 66 - 250
Target Start/End: Original strand, 44339536 - 44339720
Alignment:
| Q |
66 |
ctattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccat |
165 |
Q |
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| T |
44339536 |
ctattgcatgaaagaagcatttaatcacaaagaagcttttttagtacaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatatccat |
44339635 |
T |
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| Q |
166 |
ccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaattgaacatgtcaattatattgattataaa |
250 |
Q |
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| T |
44339636 |
ctgattcacatatcatgtagaagacagcataaaatgttggtgctggagtgatttaattgaatatattatttatattgattttaaa |
44339720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 45532540 - 45532459
Alignment:
| Q |
219 |
taattgaacatgtcaattatattgattataaa-cacacagaaaaacaacttgataaaattcagtttcatcaattcaagtgat |
299 |
Q |
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| T |
45532540 |
taattgaacatgtcaattagattgattttaaaacacacaggaaaaaaacttgataaaattcagtttcataaattcaagtgat |
45532459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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