View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_high_16 (Length: 488)
Name: NF18406_high_16
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 235 - 470
Target Start/End: Complemental strand, 16561797 - 16561562
Alignment:
| Q |
235 |
ggttaatacaattgtgtccttttttagctcaattcattaatggtatatgactagggtttagtgtactgcgtagtgtagtaagttttttaaattccagaat |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16561797 |
ggttaatacaattgtgtccttttttagctcaattcattaatggtataggactagggtttagtgtactgcgtagtgtagtaagttttttaaattccagaat |
16561698 |
T |
|
| Q |
335 |
acaaagttcaatttttactcatcaaataatattcataatggcatagtttaatgtatgtgattaaaaagtgtatttattgaagcattannnnnnnggtaaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16561697 |
acaaagttcaatttttactcatcaaataatattcataatggcatagtttaatgtatgtgattaaaaagtgtatttattgaagcattatttttttggtaaa |
16561598 |
T |
|
| Q |
435 |
cttgttcacctaatgatatgcctagtttgcatggtt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16561597 |
cttgttcacctaatgatatgcctagtttgcatggtt |
16561562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 16562554 - 16562381
Alignment:
| Q |
8 |
ataatactccagtaacaaaattccgaggccaat------gagctgttgttattttcaatcttggcattttcctctccaggagagaaggaattgtatgcct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16562554 |
ataatactccagtaacaaaattccgaggccaatattaatgagctgttgttattttcaaccttggcattttcctctccaggagagaaggaattgtatgcct |
16562455 |
T |
|
| Q |
102 |
taatttgtcagagcctagtggctatgcgtcatac-ttggtgaaaccaaatgcatattatgaaaactgagtttcc |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16562454 |
taatttgtcagagcctagtggctatgcgtcatacattggtgaaaccaattgcatattatgaaaactgagtttcc |
16562381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University