View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_17 (Length: 475)
Name: NF18406_high_17
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 153 - 459
Target Start/End: Complemental strand, 31186663 - 31186355
Alignment:
| Q |
153 |
gcctcaacgaagctttctttgataacaa--gaaaatggtttccactagcaaaaaccaatacatattcactctgttcctcctccttgcagttgctggtatt |
250 |
Q |
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| T |
31186663 |
gcctcaacgaagctttctttgataacaatagaaaatggtttccactagcaaaaaccaatacatattggctctgttcctcctccttgcagttgctggtatt |
31186564 |
T |
|
| Q |
251 |
accaatgtcatgtcccgaaaactgtacgagtcactgtctttgcaagaaagacacgagcaatggatggcagaacatggcaaagtgtacgaagatgctattg |
350 |
Q |
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| T |
31186563 |
accaatgtcatgtcccgaaaactgtacgagtcactgtctttacaagaaagacacgaacaatggatgacagaacatggcaaagtgtacgaagatgctattg |
31186464 |
T |
|
| Q |
351 |
agaaagaaaaacgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataataaaccttacaagctaagtgttaatcacct |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31186463 |
agaaagaaaaacgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataatcaaccttacaagctaagtgttaatcacct |
31186364 |
T |
|
| Q |
451 |
agctgattt |
459 |
Q |
| |
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||||||||| |
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| T |
31186363 |
agctgattt |
31186355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 154 - 459
Target Start/End: Complemental strand, 31195307 - 31195002
Alignment:
| Q |
154 |
cctcaacgaagctttctttgataacaagaaaatggtttccactagcaaaaaccaatacatattcactctgttcctcctccttgcagttgctggtattacc |
253 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
31195307 |
cctcaacaaagctttctttgataacaagaaaatggtttccactagccaaaaacaacacatattggttctgttcctcctccttgcacttgctgatattacc |
31195208 |
T |
|
| Q |
254 |
aatgtcatgtcccgaaaactgtacgagtcactgtctttgcaagaaagacacgagcaatggatggcagaacatggcaaagtgtacgaagatgctattgaga |
353 |
Q |
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||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||| ||||| |||| ||| |||| ||||||||||||||| |
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| T |
31195207 |
aatgtcatgtcccgaaaactgtatgagtcgccatctttacaagaaagacacgagcagtggatgtcagaatatggaaaattgtataaagatgctattgaga |
31195108 |
T |
|
| Q |
354 |
aagaaaaacgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataataaaccttacaagctaagtgttaatcacctagc |
453 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
31195107 |
aggaaaaacgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgacaacaaaccttacaagctaagtgttaatcacctagc |
31195008 |
T |
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| Q |
454 |
tgattt |
459 |
Q |
| |
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|||||| |
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| T |
31195007 |
tgattt |
31195002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 31186811 - 31186687
Alignment:
| Q |
7 |
gtgagaagaatcttgaataagaaagcaaccatgcagattcagattaatttaaattctatatgatctctatataaactatcaatgctattgccttcaattc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31186811 |
gtgacaagaatcttgaataagaaagcaaccatgcagattcagattaatctaaattctatatgatctctatataaactatcaatgctattgccttcaattc |
31186712 |
T |
|
| Q |
107 |
ataccaatttacatttctccctcaa |
131 |
Q |
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| T |
31186711 |
ataccaatttacatttctccctcaa |
31186687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 31195409 - 31195321
Alignment:
| Q |
41 |
agattcagattaatttaaattctatatgatctctatataaactatcaatgctattgccttcaattcataccaatttacatttctccctcaa |
131 |
Q |
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||||||||||||||||| | ||| || |||||||||||||| | |||| | ||||||||| |||||||||||||||| |||||||||||| |
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| T |
31195409 |
agattcagattaatttagagtctgta--atctctatataaaccaccaataccattgccttcgattcataccaatttacttttctccctcaa |
31195321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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