View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_2 (Length: 729)
Name: NF18406_high_2
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_2 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 3 - 714
Target Start/End: Complemental strand, 19292488 - 19291782
Alignment:
| Q |
3 |
ctaaaaacatccatcataatttaaacttgaaaagccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacat |
102 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292488 |
ctaaaaacatccatcacaatttaaacttgaaaagccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacat |
19292389 |
T |
|
| Q |
103 |
gtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292388 |
gtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttatt |
19292289 |
T |
|
| Q |
203 |
gctcattttagtccctctttagattgaaaattgccctaattattgtttaatattatatattcaggaaatcgatcgcaaagcaagagaagattaaatagaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19292288 |
gctcattttagtccctctttagattgaaaattgccctaattattgtttaatgttatatattcaggaa----atcgcaaagcaagagaagattaaatagaa |
19292193 |
T |
|
| Q |
303 |
aggcaacctgcatgtcatgtagttactgcctaaagatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
19292192 |
aggcaacctgcatgtcatgtagttactgcctagagatttggcaacatagaatttgcatttaggacatctcctcagtttatt-ttcttagcagccgggcgc |
19292094 |
T |
|
| Q |
403 |
gtcaacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacata |
502 |
Q |
| |
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||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19292093 |
gtcaacataccatcttctttctccctcctgtcggtgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttacattgtgcacata |
19291994 |
T |
|
| Q |
503 |
acatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaatttatc |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||| ||||||||||| |||||||||||| ||| |
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| T |
19291993 |
acatcctattacaattaggacatattgaattcttaacaacctcggttccatcattgatcaaaagagcgaaacattctggaagaggacaatagaatctata |
19291894 |
T |
|
| Q |
603 |
agaaatattgatcaaagccttgcacattcccttaccccaccgatcaaaaacctcgtccgnnnnnnnttaaactgcaaaacttaacttttaacgagcctct |
702 |
Q |
| |
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|||| || |||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||| |
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| T |
19291893 |
cgaaacatctatcaaagccttgcacaatcccttaccccaccgatcaaaaacctcgtctgaaaaaaattgaactgcaaaactttgcttttaacgagcctct |
19291794 |
T |
|
| Q |
703 |
gcccttggaaat |
714 |
Q |
| |
|
|| ||||||||| |
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| T |
19291793 |
gcacttggaaat |
19291782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 336 - 657
Target Start/End: Complemental strand, 19270825 - 19270507
Alignment:
| Q |
336 |
agatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtcc |
435 |
Q |
| |
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||||||||||||||| | | ||||||||||||||| ||||| || |||| ||||||| ||||| |||||||| |||||||||||| ||||| |||| |
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| T |
19270825 |
agatttggcaacataaattctgcatttaggacatcgcctccacttcttatccttagcaa---ggcgcatcaacataacatcttctttcttcctctcgtcc |
19270729 |
T |
|
| Q |
436 |
gcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattct |
535 |
Q |
| |
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|||||||||||||||||| |||||||||| || ||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| ||| || | |
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| T |
19270728 |
gcgttcagcttctcaaactcgctgcattcgattccttcatgccatggaaccttacattttgcacaaaacatcctattacaattaggacattctgagtttt |
19270629 |
T |
|
| Q |
536 |
taacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattccctt |
635 |
Q |
| |
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|||||| ||| |||| | |||||||| ||||| | ||| |||| ||| ||||| ||||| || || |||| || || || ||||| |||| || | |
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| T |
19270628 |
taacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttg |
19270529 |
T |
|
| Q |
636 |
accccaccgatcaaaaacctcg |
657 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
19270528 |
accccagcgatcaaaaacctcg |
19270507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 405 - 599
Target Start/End: Complemental strand, 19255051 - 19254857
Alignment:
| Q |
405 |
caacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataac |
504 |
Q |
| |
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||||||| |||| ||||||||||||| |||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
19255051 |
caacataacatcctctttctccctctcgtccgcattcagcgtctcgaactcactgcattcaatcccttcatgccatggaactttacattgtgcacagaac |
19254952 |
T |
|
| Q |
505 |
atcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaattt |
599 |
Q |
| |
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||||| | ||||| ||||||| || ||| ||||||| || ||| ||| |||||||| ||||| | ||| |||| ||| ||||| |||||||| |
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| T |
19254951 |
atcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagggacagtagaattt |
19254857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 469 - 655
Target Start/End: Complemental strand, 19314983 - 19314797
Alignment:
| Q |
469 |
ccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagag |
568 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||| || ||||||| | |||||| || | |
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| T |
19314983 |
ccttcatgccatggaactttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtg |
19314884 |
T |
|
| Q |
569 |
cgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattcccttaccccaccgatcaaaaacct |
655 |
Q |
| |
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| | ||| ||||||||||||||||||||||||| |||| || || |||||||| || | ||||||||||||| |||||||||| |
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| T |
19314883 |
ctgaacagtctggaaatggacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaacct |
19314797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 19260483 - 19260433
Alignment:
| Q |
491 |
attgtgcacataacatcctattacaattaggacatattgaattcttaacag |
541 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| |||||| ||||||| |
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| T |
19260483 |
attgtgcataaaacatcctattacaattaggacattctgaatttttaacag |
19260433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
85 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
135 |
Q |
| |
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||||||||||| || ||| ||||||||||||||||| ||||||| |||||| |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 484
Target Start/End: Original strand, 13206731 - 13206809
Alignment:
| Q |
406 |
aacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaa |
484 |
Q |
| |
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|||||| ||||||||| | ||||| ||||| |||| ||||| ||| || ||||||||||||||||||||||||||| |
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| T |
13206731 |
aacatatcatcttcttcccgcctctcatccgcattcatcttctaaaagtcggtgcattcaatcccttcatgccatggaa |
13206809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
83 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
160 |
Q |
| |
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|||||||||||||| | ||| ||| |||||||||||| ||||||| ||| |||| | |||||||||||| ||||||| |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
83 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
160 |
Q |
| |
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|||||||| ||||| | ||| |||||||||||||||| |||||| |||||||| | |||||||||||| ||||||| |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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