View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_23 (Length: 456)

Name: NF18406_high_23
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_23
NF18406_high_23
[»] chr1 (1 HSPs)
chr1 (1-163)||(38821381-38821543)
[»] chr4 (2 HSPs)
chr4 (288-401)||(20059676-20059789)
chr4 (253-399)||(13010827-13010970)
[»] chr2 (1 HSPs)
chr2 (253-399)||(21189057-21189200)
[»] chr5 (5 HSPs)
chr5 (254-373)||(39291702-39291818)
chr5 (309-426)||(26705393-26705511)
chr5 (250-401)||(26710982-26711131)
chr5 (309-426)||(26975126-26975244)
chr5 (250-401)||(26980719-26980868)
[»] chr7 (1 HSPs)
chr7 (253-421)||(5435139-5435304)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 38821381 - 38821543
Alignment:
Q  1 gtgttcactatccagcagtcgaccatggctccacaaatttctgttctaagttctgatttggaacctcgcaattggnnnnnnnnnnnnnnnnncaaagtta 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||                 ||||||||    
T  38821381 gtgttcactatccagcagtcgaccatggctccacaaatctctgttctaagttctgatttggaacctcccaattggttttatttttttcttttcaaagtta 38821480  T
Q  101 ccgtgttagaattgttgtgtttgaacataaaatatttacatcttatacaactactagaaatgt 163  Q
    |||||||||||| || |||||||||||||||||||||||| |||||| ||| |||||||||||    
T  38821481 ccgtgttagaatagtagtgtttgaacataaaatatttacaccttatagaaccactagaaatgt 38821543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 20059789 - 20059676
Alignment:
Q  288 tcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagtttttgt 387  Q
    |||| ||||||||||||| |  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||| | ||||||    
T  20059789 tcatcattattaagagattcttattttattccttttgaccacatgttcctattattatgattagtcaaaggttagtacctacttcactaaccggttttgt 20059690  T
Q  388 tagcctatgagaat 401  Q
    ||||||||||||||    
T  20059689 tagcctatgagaat 20059676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 13010970 - 13010827
Alignment:
Q  253 ggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagt 352  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||   |||||| |  |||| |||| || | |||||||||||||||| |||||||||||    
T  13010970 ggttccaatatccccttaaatatctccatgactcatcattatta---agagatccttatttcattctttgtaaccacatgttcctattattatggttagt 13010874  T
Q  353 caaaggttagtgcctacttcagtaacagtttttgttagcctatgaga 399  Q
    ||||||||||||||||||| | |||| | |||||||| |||||||||    
T  13010873 caaaggttagtgcctactttactaactggttttgttaacctatgaga 13010827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 21189057 - 21189200
Alignment:
Q  253 ggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagt 352  Q
    ||||| |||||||| ||| ||||||| ||||||||||||||   ||||||||| || ||||||||| || | |||||||||||||||| |||||||||||    
T  21189057 ggttccaatatccctttaaatatctccatgactcatcatta---ttaagagatccatattttattctttgtaaccacatgttcctattattatggttagt 21189153  T
Q  353 caaaggttagtgcctacttcagtaacagtttttgttagcctatgaga 399  Q
    ||||||||||||||||||| | |||| | |||||||| |||||||||    
T  21189154 caaaggttagtgcctactttactaactgattttgttaacctatgaga 21189200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 373
Target Start/End: Original strand, 39291702 - 39291818
Alignment:
Q  254 gttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtc 353  Q
    |||| |||||||||||| ||||||| ||||||||||||||   ||||||||| |  ||| |||| |||||||||||||||||||||| ||||||||||||    
T  39291702 gttccaatatccccttaaatatctccatgactcatcatta---ttaagagatccttattctatttcttttgaccacatgttcctattattatggttagtc 39291798  T
Q  354 aaaggttagtgcctacttca 373  Q
    ||||||||||||||||||||    
T  39291799 aaaggttagtgcctacttca 39291818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 26705511 - 26705393
Alignment:
Q  309 cattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaatggacat 407  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| |||| || ||||||||||||||| ||| |    
T  26705511 cattttattcattttgaccacatgttcctattattatggttagtcaaaggttagtgcctacttcgttaaccgtttcttcttagcctatgagaattgactt 26705412  T
Q  408 tgcttgctatatatttaca 426  Q
    ||| ||| |||||| ||||    
T  26705411 tgcctgccatatatataca 26705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 401
Target Start/End: Complemental strand, 26711131 - 26710982
Alignment:
Q  250 actggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggtt 349  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||||   ||||||   |||||||||| |||||| |||||| ||||||| |||||| |    
T  26711131 actggttccaatatcccattaaatatctccatgactcatcattatta---agagatattcattttattcattttgatcacatggtcctattattatggct 26711035  T
Q  350 agtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaat 401  Q
     |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  26711034 ggtcaaaggctagtgcttacttcagtaaccgtttcttgttagcctatgagaat 26710982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 26975244 - 26975126
Alignment:
Q  309 cattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaatggacat 407  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| |||| || ||||||||||||||| ||| |    
T  26975244 cattttattcattttgaccacatgttcctattattatggttagtcaaaggttagtgcctacttcgttaaccgtttcttcttagcctatgagaattgactt 26975145  T
Q  408 tgcttgctatatatttaca 426  Q
    ||| ||| |||||| ||||    
T  26975144 tgcctgccatatatataca 26975126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 401
Target Start/End: Complemental strand, 26980868 - 26980719
Alignment:
Q  250 actggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggtt 349  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||||   ||||||   |||||||||| |||||| |||||| ||||||| |||||| |    
T  26980868 actggttccaatatcccattaaatatctccatgactcatcattatta---agagatattcattttattcattttgatcacatggtcctattattatggct 26980772  T
Q  350 agtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaat 401  Q
     |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  26980771 ggtcaaaggctagtgcttacttcagtaaccgtttcttgttagcctatgagaat 26980719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 421
Target Start/End: Complemental strand, 5435304 - 5435139
Alignment:
Q  253 ggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagt 352  Q
    ||||| |||||||  ||| ||||||| |||||||||| ||||||   || ||| | ||||||||||| ||||| ||||||||| ||||  | || |||||    
T  5435304 ggttccaatatccatttaaatatctccatgactcatcgttatta---agtgatactcattttattccctttgaacacatgttcatattactttgattagt 5435208  T
Q  353 caaaggttagtgcctacttcagtaacagtttttgttagcctatgagaatggacattgcttgctatatat 421  Q
    ||||||||||||||||||||| |||| ||||||||||||||||  ||||| |||||| |||||||||||    
T  5435207 caaaggttagtgcctacttcattaacggtttttgttagcctatacgaatgaacattgtttgctatatat 5435139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University