View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_24 (Length: 446)
Name: NF18406_high_24
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 40001599 - 40002018
Alignment:
| Q |
1 |
cttttcaaggaatctgagctgcaaaaaccaactatatttttaacgtgctctacacactaaacttgagttcttatttctttgcaacattcactttcttctt |
100 |
Q |
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| T |
40001599 |
cttttcaaggaatctcagctgcaaaaaccaactatatttttaacgtgctctacacactaaacttgagttcttatttctttgcaacattcactttcttctt |
40001698 |
T |
|
| Q |
101 |
ggttccaattacggttgttagtagtaataagcacaaacatatgtctaataaattgggagtataatatatattcgtattttataaccaaatgactaaagta |
200 |
Q |
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| T |
40001699 |
cgttccaattacggttgttagtagtaataaggacaaacatatgtttaataaattggaagtataatatatattcgtatttta--accaaatgactaaagta |
40001796 |
T |
|
| Q |
201 |
aaatttagtgatccaattattacatcatgttcatgcaattgtattgaggtttgatacagattgatcaaattaaatcttgcatatcagttcaagtgcagat |
300 |
Q |
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| T |
40001797 |
aaatttagtgatccaattattacatcatgttcatgcaattgtattgaggtttgatacagattgatcaaattaaatcttgcatatcagttcaagtgcagat |
40001896 |
T |
|
| Q |
301 |
gctcaaatctcaactgataaaataattttagttttgaaacagaaaaatatattgaaactcgaacacaagcacaagtggtacccgggtaaagccaaaaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40001897 |
gctcaaatctcaactgataaaataattttagttttgaaacagaaaaatatattgaaactcgaacacaagcacaagtggtacccgggtaaagccaaaaatt |
40001996 |
T |
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| Q |
401 |
acaacgctcactatactagcag |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40001997 |
acaacgctcactatactagcag |
40002018 |
T |
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