View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_25 (Length: 440)
Name: NF18406_high_25
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 187 - 369
Target Start/End: Complemental strand, 56840 - 56658
Alignment:
| Q |
187 |
cattctgaatcttatacctaagtgatccattttcatcagcttttttctcaagaagcagaagaaacgttcagagttgttggtaaatgtttgtttaactgac |
286 |
Q |
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| T |
56840 |
cattctgaatcttatacctaagtgatccattttcatcagcttttttctcaagaagcagaagaaacgttcagagttgttggtaaatgtttgtttaactgaa |
56741 |
T |
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| Q |
287 |
atgttcaaaacttgtgatttaagtctcctctaaaaagacacttatgccctttatgtagcatttaatagtataattccattaat |
369 |
Q |
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| T |
56740 |
atgttcaaaacttgtgattaaagtctcctctaaaaagacacttatgccctttatgtagcatttaatagtataattccattaat |
56658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 57011 - 56901
Alignment:
| Q |
14 |
ttcttaacaatcaaaggatcattctttccattgaaagattcatctggatcatttgatttgagcttcacaatacttgttttggtctctgtagccattcatg |
113 |
Q |
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| T |
57011 |
ttcttaacaatcaaaggatcattctttccattgaaagattcatctggatcatttgatttgagcttcacaatacttgttttggtctctgtagccattcatg |
56912 |
T |
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| Q |
114 |
aatcttatacc |
124 |
Q |
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| T |
56911 |
aatcttatacc |
56901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 56603 - 56568
Alignment:
| Q |
388 |
aatctagttaaaatgatcaaaatgttttcgtatgtt |
423 |
Q |
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| T |
56603 |
aatctagttaaaatgatcaaaatgttttcgtatgtt |
56568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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