View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_28 (Length: 402)

Name: NF18406_high_28
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_28
NF18406_high_28
[»] scaffold0802 (2 HSPs)
scaffold0802 (89-271)||(1288-1473)
scaffold0802 (98-147)||(1123-1171)
[»] chr6 (18 HSPs)
chr6 (89-206)||(18242024-18242143)
chr6 (99-206)||(3403867-3403976)
chr6 (99-206)||(30388242-30388351)
chr6 (98-202)||(2762554-2762660)
chr6 (98-172)||(10039844-10039918)
chr6 (98-172)||(11656583-11656657)
chr6 (98-205)||(13579529-13579638)
chr6 (98-157)||(33972190-33972249)
chr6 (98-155)||(21032097-21032154)
chr6 (98-155)||(33658560-33658617)
chr6 (104-147)||(31598157-31598200)
chr6 (104-147)||(31598641-31598684)
chr6 (101-147)||(12714436-12714481)
chr6 (98-147)||(18241859-18241907)
chr6 (99-155)||(23250772-23250827)
chr6 (98-147)||(3403722-3403770)
chr6 (98-147)||(3403990-3404038)
chr6 (102-147)||(21032285-21032329)
[»] chr8 (25 HSPs)
chr8 (89-271)||(15156053-15156238)
chr8 (89-271)||(12281125-12281310)
chr8 (99-206)||(37752181-37752290)
chr8 (99-271)||(43245872-43246047)
chr8 (89-270)||(765736-765920)
chr8 (99-271)||(41662281-41662456)
chr8 (99-193)||(16929022-16929115)
chr8 (101-192)||(43162417-43162508)
chr8 (100-205)||(74864-74971)
chr8 (98-190)||(18019872-18019964)
chr8 (89-193)||(34313932-34314036)
chr8 (98-204)||(7127828-7127936)
chr8 (98-172)||(9465675-9465749)
chr8 (98-188)||(37670132-37670222)
chr8 (98-171)||(33748161-33748236)
chr8 (98-155)||(22786930-22786987)
chr8 (98-147)||(12281427-12281475)
chr8 (108-173)||(43597892-43597957)
chr8 (98-147)||(15155888-15155936)
chr8 (98-147)||(37752417-37752465)
chr8 (99-155)||(11007651-11007707)
chr8 (98-147)||(41662112-41662160)
chr8 (98-147)||(43245876-43245924)
chr8 (215-271)||(12281423-12281479)
chr8 (231-271)||(23123339-23123379)
[»] chr1 (14 HSPs)
chr1 (89-258)||(17518472-17518642)
chr1 (279-389)||(38821269-38821380)
chr1 (89-271)||(41082910-41083094)
chr1 (98-271)||(47955307-47955483)
chr1 (89-204)||(8108890-8109007)
chr1 (99-205)||(22149580-22149687)
chr1 (101-206)||(31847961-31848067)
chr1 (100-155)||(46057013-46057068)
chr1 (215-269)||(1176839-1176893)
chr1 (98-155)||(1176833-1176889)
chr1 (98-147)||(8108726-8108774)
chr1 (98-147)||(17518308-17518355)
chr1 (98-147)||(47955609-47955657)
chr1 (99-147)||(22149701-22149748)
[»] chr2 (20 HSPs)
chr2 (89-193)||(6171325-6171429)
chr2 (89-271)||(30190924-30191109)
chr2 (89-206)||(32673011-32673130)
chr2 (99-206)||(11883690-11883799)
chr2 (89-271)||(20347332-20347517)
chr2 (99-206)||(40469607-40469716)
chr2 (98-193)||(26737657-26737753)
chr2 (98-202)||(17345802-17345908)
chr2 (98-177)||(15920912-15920991)
chr2 (98-172)||(40221489-40221563)
chr2 (98-155)||(43495485-43495541)
chr2 (98-147)||(32672847-32672895)
chr2 (98-147)||(11883628-11883676)
chr2 (98-147)||(11883927-11883975)
chr2 (98-155)||(18055163-18055220)
chr2 (98-147)||(24832336-24832384)
chr2 (98-147)||(30191226-30191274)
chr2 (98-147)||(40469730-40469778)
chr2 (99-147)||(6171161-6171207)
chr2 (215-271)||(17346032-17346087)
[»] scaffold0319 (2 HSPs)
scaffold0319 (99-206)||(6575-6684)
scaffold0319 (98-147)||(6399-6447)
[»] chr5 (20 HSPs)
chr5 (99-206)||(18433082-18433191)
chr5 (100-206)||(26020517-26020625)
chr5 (89-206)||(25115824-25115943)
chr5 (89-206)||(25174916-25175035)
chr5 (100-206)||(34576932-34577040)
chr5 (98-204)||(5187591-5187699)
chr5 (134-204)||(22429138-22429210)
chr5 (101-193)||(9665608-9665700)
chr5 (101-203)||(5779742-5779846)
chr5 (103-156)||(12441196-12441249)
chr5 (98-147)||(5187831-5187879)
chr5 (98-147)||(18433317-18433365)
chr5 (98-147)||(25116062-25116110)
chr5 (98-147)||(25175152-25175200)
chr5 (98-154)||(9869739-9869795)
chr5 (220-271)||(5187832-5187883)
chr5 (98-147)||(5779570-5779617)
chr5 (101-155)||(23011261-23011315)
chr5 (98-147)||(18433020-18433068)
chr5 (98-147)||(23011383-23011430)
[»] chr3 (19 HSPs)
chr3 (89-271)||(10293609-10293793)
chr3 (89-271)||(20968888-20969072)
chr3 (99-205)||(18874957-18875065)
chr3 (100-259)||(9026748-9026907)
chr3 (98-172)||(3644721-3644795)
chr3 (98-156)||(1101091-1101148)
chr3 (98-155)||(13657622-13657679)
chr3 (99-156)||(45060774-45060830)
chr3 (100-156)||(4947377-4947433)
chr3 (98-147)||(3644784-3644832)
chr3 (98-147)||(10293910-10293958)
chr3 (98-155)||(17372474-17372531)
chr3 (98-149)||(18874885-18874935)
chr3 (98-147)||(4947264-4947312)
chr3 (100-152)||(14015873-14015926)
chr3 (98-155)||(17440877-17440934)
chr3 (98-147)||(18875192-18875240)
chr3 (98-147)||(20968723-20968771)
chr3 (218-271)||(47665912-47665965)
[»] chr7 (21 HSPs)
chr7 (89-271)||(3687525-3687709)
chr7 (89-271)||(9412193-9412378)
chr7 (97-204)||(6908390-6908498)
chr7 (99-187)||(13772793-13772881)
chr7 (100-204)||(5349641-5349747)
chr7 (101-187)||(15567169-15567255)
chr7 (101-204)||(35080132-35080237)
chr7 (99-187)||(33628466-33628554)
chr7 (98-206)||(34235856-34235966)
chr7 (98-147)||(9412028-9412076)
chr7 (220-271)||(30857906-30857957)
chr7 (98-147)||(18925230-18925279)
chr7 (160-205)||(29291982-29292029)
chr7 (98-156)||(8953717-8953775)
chr7 (101-147)||(27096170-27096216)
chr7 (101-147)||(27182087-27182133)
chr7 (98-155)||(5735372-5735429)
chr7 (98-155)||(23686538-23686595)
chr7 (215-271)||(9412024-9412080)
chr7 (98-134)||(35080224-35080259)
chr7 (99-147)||(38191388-38191435)
[»] scaffold0192 (2 HSPs)
scaffold0192 (99-206)||(25247-25356)
scaffold0192 (98-147)||(25370-25418)
[»] chr4 (24 HSPs)
chr4 (89-193)||(11241558-11241662)
chr4 (89-205)||(3930348-3930466)
chr4 (99-206)||(16555695-16555804)
chr4 (89-206)||(13198671-13198790)
chr4 (100-204)||(5206138-5206244)
chr4 (100-193)||(22681662-22681754)
chr4 (100-193)||(35393558-35393651)
chr4 (98-188)||(27304894-27304984)
chr4 (98-181)||(8488278-8488361)
chr4 (98-155)||(49178636-49178693)
chr4 (97-160)||(24775633-24775696)
chr4 (98-147)||(16555520-16555568)
chr4 (98-147)||(5206231-5206278)
chr4 (98-147)||(8181996-8182045)
chr4 (98-147)||(13198907-13198955)
chr4 (98-147)||(16555818-16555866)
chr4 (220-271)||(22681881-22681932)
chr4 (220-271)||(24775785-24775836)
chr4 (101-147)||(11241394-11241439)
chr4 (98-147)||(8182173-8182222)
chr4 (98-147)||(23432481-23432530)
chr4 (100-156)||(7603296-7603352)
chr4 (215-271)||(16555516-16555572)
chr4 (231-271)||(23433498-23433538)
[»] scaffold0110 (1 HSPs)
scaffold0110 (98-206)||(45684-45794)
[»] scaffold0002 (1 HSPs)
scaffold0002 (106-249)||(411945-412090)
[»] scaffold1221 (1 HSPs)
scaffold1221 (89-193)||(1563-1667)
[»] scaffold0598 (1 HSPs)
scaffold0598 (98-193)||(6752-6847)
[»] scaffold0001 (4 HSPs)
scaffold0001 (101-172)||(439001-439072)
scaffold0001 (101-155)||(183544-183598)
scaffold0001 (101-147)||(439203-439248)
scaffold0001 (98-147)||(438935-438983)
[»] scaffold0015 (1 HSPs)
scaffold0015 (98-206)||(16920-17030)
[»] scaffold0035 (1 HSPs)
scaffold0035 (98-152)||(73086-73140)


Alignment Details
Target: scaffold0802 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 1288 - 1473
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 1387  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         |||| ||||||| || ||||||||| ||||||||| | ||||||||| |||||||||    
T  1388 gatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaaagtgcaattaagc 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 1171 - 1123
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  1171 gggtgcaaaatcgcacaattaac-aaaagatagggggaaaaagtgcaatt 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 18242024 - 18242143
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18242024 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 18242123  T
Q  189 gat--ggtgcaaaatcgctc 206  Q
    |||  |||||||||||||||    
T  18242124 gatggggtgcaaaatcgctc 18242143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 3403867 - 3403976
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  3403867 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 3403966  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  3403967 aaaatcgctc 3403976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 30388242 - 30388351
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||    
T  30388242 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggtaaaaagatggggtgc 30388341  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  30388342 aaaatcgctc 30388351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 2762660 - 2762554
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  2762660 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaagatgaggtg 2762561  T
Q  196 caaaatc 202  Q
    |||||||    
T  2762560 caaaatc 2762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 10039844 - 10039918
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10039844 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 10039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 11656657 - 11656583
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11656657 gggtgcaaaatcgcacaattatcaaaacgatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 11656583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 13579529 - 13579638
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||||| ||| ||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||  ||||    
T  13579529 gggtgcagaattgcacaattagcaaaaatatagggggcaaaagtgcaattgaacacaaatatggggtgcaaaataagaaaggggccaaaaaaatggggtg 13579628  T
Q  196 caaaatcgct 205  Q
    ||||||||||    
T  13579629 caaaatcgct 13579638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 33972190 - 33972249
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaag 157  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  33972190 gggtgcaaaatctcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaag 33972249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 21032154 - 21032097
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||||| |||| |||||| ||||||||||||||| | |||||||    
T  21032154 gggtgcaaaatcgcacaattgacaagaagatagggggcaaaagtgcaactaaacacaa 21032097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 33658617 - 33658560
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||| ||||||||  ||||||||||| |||||||||||||||| |||||||    
T  33658617 gggtgcaaaattgcacaattggcaaaaagataaagggcaaaagtgcaattaaacacaa 33658560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 31598157 - 31598200
Alignment:
Q  104 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  31598157 aaaatcgcacaattgacaaaaagatagggggcaaaagtgcaatt 31598200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 31598641 - 31598684
Alignment:
Q  104 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  31598641 aaaatcgcacaattgacaaaaagatagggggcaaaagtgcaatt 31598684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 12714481 - 12714436
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  12714481 tgcaaaatcgcacaattaac-aaaagatagggggcaaaagtgcaatt 12714436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18241907 - 18241859
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  18241907 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 18241859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 23250772 - 23250827
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||||| |||||||    
T  23250772 ggtgcaaaatcgcacaattaaccaaaatat-aggggtaaaagtgcaattaaacacaa 23250827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 3403770 - 3403722
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  3403770 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 3403722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3403990 - 3404038
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  3403990 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 3404038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 21032285 - 21032329
Alignment:
Q  102 gcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  21032285 gcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 21032329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 15156053 - 15156238
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156053 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 15156152  T
Q  189 gat--ggtgcaaaatcgct-cnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  ||||||||||||||          |||| ||||||| || ||||||||||||||||||| | || |||||| |||||||||    
T  15156153 gatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaattaagc 15156238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 12281310 - 12281125
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12281310 tataagtgagggtgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 12281211  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         |||||||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  12281210 gatggggtgcaaaatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 12281125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 37752290 - 37752181
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  37752290 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 37752191  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  37752190 aaaatcgctc 37752181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 43246047 - 43245872
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  43246047 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 43245948  T
Q  197 aaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||||||         |||| ||||||| || ||||||||  ||||||||| | ||||||||| |||||||||    
T  43245947 aaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagatagggggaaaaagtgcaattaagc 43245872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 765920 - 765736
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  765920 tataagtgagggtgcaaaatcgcacggttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 765821  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaag 270  Q
    |||  |||||||||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| ||||||||    
T  765820 gatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaag 765736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 41662281 - 41662456
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  |||||    
T  41662281 ggtgtaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagataaggtgcaaaatcagaaagggggcaaaaagatggggtgc 41662380  T
Q  197 aaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  41662381 aaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 41662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 16929115 - 16929022
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16929115 ggtgcaaaatctcacaattaacaaaaagataaggggcaaaagtgcaatt-aacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 16929022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 43162417 - 43162508
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatg 192  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43162417 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaagatg 43162508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 74864 - 74971
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||    
T  74864 gtgcaaaatcgcacaattgacaaaaagataggggacaaaagtgcaattaaacacaaagatgtggtgcaaaatcagaaagggggcaaaaagatggggtgca 74963  T
Q  198 aaatcgct 205  Q
    ||||||||    
T  74964 aaatcgct 74971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 18019964 - 18019872
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaaga 190  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18019964 gggtgcaaaatcgcacaattaggaaaaagatagggggcaaaagtgcaattgaacacaaagatgcggtgcaaaatcagaaagggggcaaaaaga 18019872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 34313932 - 34314036
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  34313932 tataagtgagggtgcaaaatcgtacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaaggggcaaaaa 34314031  T
Q  189 gatgg 193  Q
    |||||    
T  34314032 gatgg 34314036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 7127828 - 7127936
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    |||||||||||| | |||||| |||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||  ||||    
T  7127828 gggtgcaaaatcacgcaattagcaaaaagatagggggtaaaagtgcaattgaacacaaaaatgggatgcaaaatcagaaaaggggtaaaaagatagggtg 7127927  T
Q  196 caaaatcgc 204  Q
    |||||||||    
T  7127928 caaaatcgc 7127936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 9465749 - 9465675
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  9465749 gggtgcaaaatcgcacagttagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatc 9465675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 37670132 - 37670222
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||||||||| |||||||| |||||| ||| ||  ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  37670132 gggtgcaaaatcacacaattagcaaaaaaatatggtacaaaaatgcaattaaacacaaagatggggtgctaaatcagaaagggggcaaaaa 37670222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 33748161 - 33748236
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaaga--taaggggcaaaagtgcaattgaacacaaagatggggtgcaaaat 171  Q
    ||||||||||||||||||||| |||||| |  || |||||||||||||||||||||||||||||| ||||||||||    
T  33748161 gggtgcaaaatcgcacaattagcaaaaaaaaatagggggcaaaagtgcaattgaacacaaagatgaggtgcaaaat 33748236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 22786987 - 22786930
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||    
T  22786987 gggtgcaaaatcgcacaactgacaaatagataaggggcaaaagtgcaattaaacacaa 22786930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 12281427 - 12281475
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  12281427 gggtgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 12281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 43597957 - 43597892
Alignment:
Q  108 tcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatca 173  Q
    ||||||||||| |||||||||| ||||||||||  ||||||||||||||| || | ||||||||||    
T  43597957 tcgcacaattagcaaaaagatagggggcaaaagcacaattgaacacaaagttgagatgcaaaatca 43597892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 15155936 - 15155888
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  15155936 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 15155888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 37752417 - 37752465
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  37752417 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 37752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 11007707 - 11007651
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||| ||||||||||||||  |||||||||| || |||||||||||||| |||||||    
T  11007707 ggtgtaaaatcgcacaattggcaaaaagatagggagcaaaagtgcaattaaacacaa 11007651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 41662160 - 41662112
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||| ||||||||    
T  41662160 gggtgcaaaatcgcacaattaac-aaaagatatggggaaaatgtgcaatt 41662112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 43245924 - 43245876
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  43245924 gggtgcaaaatcgcacaattatc-aaaagatagggggaaaaagtgcaatt 43245876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 12281423 - 12281479
Alignment:
Q  215 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 12281479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 23123379 - 23123339
Alignment:
Q  231 gcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  23123379 gcacaattgacaaaagataggagggaaaagtgcaattaagc 23123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 17518472 - 17518642
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17518472 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 17518571  T
Q  189 gat-ggtgcaaaatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaa 258  Q
    ||| |||||||||| ||||        |||| ||||||| || ||||||||| ||||||||| | ||||||    
T  17518572 gatgggtgcaaaattgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaa 17518642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 38821269 - 38821380
Alignment:
Q  279 taattaaacactt-agttggattactgaaattaaatgtcttgatcaaatactgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 377  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821269 taattaaacactttagttggattactgaaattaaatctcttgatcaaatattgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 38821368  T
Q  378 attagtatgatg 389  Q
    ||||||||||||    
T  38821369 attagtatgatg 38821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 41083094 - 41082910
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41083094 tataagtgagggtgcaaaatcgcacaattagtaaaaagataaggggcaaaagtacaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 41082995  T
Q  189 gat--ggtgcaaaatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  ||||||||||||||         |||| | ||||| || ||||||||| ||||||||| | ||||||||| |||||||||    
T  41082994 gatggggtgcaaaatcgctaaaaaaaaagaggggatgcaaaatcgcacaattggcaaaagatagggggaaaaagtacaattaagc 41082910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 47955483 - 47955307
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  47955483 gggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtg 47955384  T
Q  196 caaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  47955383 caaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 47955307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 8108890 - 8109007
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8108890 tataagtgagggtgtaaaatcgcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaa 8108989  T
Q  189 gat--ggtgcaaaatcgc 204  Q
    |||  |||||||||||||    
T  8108990 gatggggtgcaaaatcgc 8109007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 22149580 - 22149687
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||    
T  22149580 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtgcaaaatcagaaa-ggggcaaaaagatggggtgc 22149678  T
Q  197 aaaatcgct 205  Q
    |||||||||    
T  22149679 aaaatcgct 22149687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 31848067 - 31847961
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgca--aaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||  ||||||||||  |||||||||||||||| |||||||  |   ||| ||  ||| ||||||||||||||||||||  |||||    
T  31848067 tgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattaaacacaagaa---ggtccatcaaaccagaaagggggcaaaaagatcgggtgc 31847971  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  31847970 aaaatcgctc 31847961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 46057068 - 46057013
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||  |||||| ||| ||||||||| ||||||| |||||||    
T  46057068 gtgcaaaatcgcacaattggcaaaaaaatagggggcaaaattgcaattaaacacaa 46057013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 1176893 - 1176839
Alignment:
Q  215 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaa 269  Q
    |||| ||||||| |||||||||||||||||||||| | || |||||| |||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 1176889 - 1176833
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||| |||||||| |||||| |||| |||| |||||||||||| |||||||    
T  1176889 gggtgcaaaattgcacaattgacaaaa-gatagggggtaaaagtgcaattaaacacaa 1176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 8108774 - 8108726
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| || | ||||||||||||    
T  8108774 gggtgcaaaatcgcacaattaac-aaaagatagggaggaaaagtgcaatt 8108726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 17518355 - 17518308
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  17518355 gggtgcaaaatcgcacaattaac-aaaagataagggg-aaaggtgcaatt 17518308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 47955609 - 47955657
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||  |||||||| |||| ||||||||||||    
T  47955609 gggtgcaaaatcgcacaattaa-taaaagataggggggaaaagtgcaatt 47955657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 22149701 - 22149748
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  22149701 ggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 22149748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 6171325 - 6171429
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171325 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 6171424  T
Q  189 gatgg 193  Q
    |||||    
T  6171425 gatgg 6171429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 30191109 - 30190924
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30191109 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaa 30191010  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  30191009 gatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 30190924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 32673011 - 32673130
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32673011 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagagggcgaaaa 32673110  T
Q  189 gat--ggtgcaaaatcgctc 206  Q
    |||  |||||||||||||||    
T  32673111 gatggggtgcaaaatcgctc 32673130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 11883799 - 11883690
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||    
T  11883799 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcataaagggggcaaaaagatgaggtgc 11883700  T
Q  197 aaaatcgctc 206  Q
    ||||| ||||    
T  11883699 aaaattgctc 11883690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 20347332 - 20347517
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20347332 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaa 20347431  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  ||||||||||| |||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  20347432 gatggggtgcaaaatccctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20347517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 40469607 - 40469716
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  40469607 ggtgcaaaatcgcacaattagcaaaacgataagggggaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 40469706  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  40469707 aaaatcgctc 40469716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 26737657 - 26737753
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt-gaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  26737657 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatttgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatgg 26737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 17345908 - 17345802
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||  ||||    
T  17345908 gggtgaaaaatcgcacaattaacaaaaatatagggggcaaaagtgcaattgaacacaaagatggagtgcaaaatcaaaagggggccaaaaagatagggtg 17345809  T
Q  196 caaaatc 202  Q
    |||||||    
T  17345808 caaaatc 17345802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 15920912 - 15920991
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 177  Q
    ||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  15920912 gggtgtaaaatcgcacaattagcaaaaagttagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 15920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 40221489 - 40221563
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  40221489 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagcgcaattgaacacaaagatggggtgcaaaatc 40221563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 43495485 - 43495541
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||    
T  43495485 gggtgcaaaatcgcacaattgacaaaaagat-agggggaaaagtgcaattaaacacaa 43495541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 32672895 - 32672847
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  32672895 gggtgcaaaatcgcacaattaac-aaaagataaggaacaaaagtgcaatt 32672847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 11883676 - 11883628
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  11883676 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 11883628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 11883927 - 11883975
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  11883927 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 11883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 18055220 - 18055163
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||||  |||||  ||| || |||||||||||||| |||||||    
T  18055220 gggtgcaaaatcgcacaattggcaaaattatagggtgcaaaagtgcaattaaacacaa 18055163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 24832384 - 24832336
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  24832384 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 24832336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 30191226 - 30191274
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||  |||||||| |||| ||||||||||||    
T  30191226 gggtgcaaaatcgcacaattaa-taaaagataggggggaaaagtgcaatt 30191274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 40469730 - 40469778
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  40469730 gggtgcaaaatcgcacaattagc-aaaagatagggggaaaaagtgcaatt 40469778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 6171207 - 6171161
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  6171207 ggtgcaaaatcgcacaattaac-aaaagat-agggggaaaagtgcaatt 6171161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 17346032 - 17346087
Alignment:
Q  215 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||||||||||| || ||||||||  |||||||||| |||||||||| |||||||||    
T  17346032 gaggaggtgcaaaatcgcacaattagcaaaagataa-aggaaaaagtgcaattaagc 17346087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 6575 - 6684
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  6575 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 6674  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  6675 aaaatcgctc 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 6447 - 6399
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  6447 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 6399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 18433191 - 18433082
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  18433191 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 18433092  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  18433091 aaaatcgctc 18433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 26020625 - 26020517
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  26020625 gtgcaaaatcgcacaattaacaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgcggtgca 26020526  T
Q  198 aaatcgctc 206  Q
    |||||||||    
T  26020525 aaatcgctc 26020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 25115943 - 25115824
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25115943 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 25115844  T
Q  189 gat--ggtgcaaaatcgctc 206  Q
    |||  |||||||||||||||    
T  25115843 gatggggtgcaaaatcgctc 25115824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 25175035 - 25174916
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25175035 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 25174936  T
Q  189 gat--ggtgcaaaatcgctc 206  Q
    |||  |||||||||||||||    
T  25174935 gatggggtgcaaaatcgctc 25174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 34577040 - 34576932
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||    
T  34577040 gtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtggaaaatcagaaagggggcaaaaagatggggtgca 34576941  T
Q  198 aaatcgctc 206  Q
    |||||||||    
T  34576940 aaatcgctc 34576932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 5187699 - 5187591
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    |||| |||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||    
T  5187699 gggtacaaaatcgcataattagcaaaaagataggggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaggggacaaaaagatggggtg 5187600  T
Q  196 caaaatcgc 204  Q
    |||||||||    
T  5187599 caaaatcgc 5187591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 22429138 - 22429210
Alignment:
Q  134 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  22429138 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaaaatcgc 22429210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 9665700 - 9665608
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    |||| ||||||||||||| |||||||||| |||||||||   |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9665700 tgcagaatcgcacaattagcaaaaagatagggggcaaaaacacaattgaacacaaagatgaggtgcaaaatcagaaagggagcaaaaagatgg 9665608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 5779742 - 5779846
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg--tgcaa 198  Q
    |||||||||||||||||| |||||||||| | | |||||||||||||||||||||| ||| | ||||||||||||||| ||  ||||||||||  |||||    
T  5779742 tgcaaaatcgcacaattagcaaaaagataggagacaaaagtgcaattgaacacaaaaatgagatgcaaaatcagaaagaggaaaaaaagatggaatgcaa 5779841  T
Q  199 aatcg 203  Q
    |||||    
T  5779842 aatcg 5779846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 12441196 - 12441249
Alignment:
Q  103 caaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  12441196 caaaatcgcacaattgacaaaaagatagggggcaaaagtgcaattaaacacaaa 12441249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 5187831 - 5187879
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5187831 gggtgcaaaattgcacaattaacaaaa-gataaggggcaaaagtgcaatt 5187879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 18433317 - 18433365
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  18433317 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 18433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 25116062 - 25116110
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  25116062 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 25116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 25175152 - 25175200
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  25175152 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 25175200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 9869739 - 9869795
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacaca 154  Q
    ||||||||||||||||||||   ||||||| | ||||||||||||||||| ||||||    
T  9869739 gggtgcaaaatcgcacaattggtaaaaagacagggggcaaaagtgcaattaaacaca 9869795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 5187832 - 5187883
Alignment:
Q  220 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||| ||||||||||| |||||||||||| || |||||| |||||||||    
T  5187832 ggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagc 5187883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 5779617 - 5779570
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||| ||||||||||||||  ||||| |||||||||||||||    
T  5779617 gggtgcaaaatcacacaattaacaaaa--ataagaggcaaaagtgcaatt 5779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 23011261 - 23011315
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||  | |||||||| ||||||||| ||||||| |||||||    
T  23011261 tgcaaaatcgcacaattggctaaaagatagggggcaaaattgcaattaaacacaa 23011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18433068 - 18433020
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  18433068 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 18433020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 23011383 - 23011430
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  23011383 gggtgcaaaatcgcacaattaac-aaaagataa-gggaaaaagtgcaatt 23011430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 10293793 - 10293609
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10293793 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagat-gggtgcaaaatcagaaagggggcaaaaa 10293695  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         |||| ||||||| || ||||||||||||||||||| | | ||||| | |||||||||    
T  10293694 gatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggaaaaaaatgcaattaagc 10293609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 20968888 - 20969072
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968888 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 20968987  T
Q  189 gat--ggtgcaaaatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         | | ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  20968988 gatggggtgcaaaatcgctcaaaaaaaaaaaggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 18875065 - 18874957
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  18875065 ggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 18874966  T
Q  197 aaaatcgct 205  Q
    |||||||||    
T  18874965 aaaatcgct 18874957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 9026907 - 9026748
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  ||||||    
T  9026907 gtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagacggggggcaaaatcagaaaggggg-aaaaagatggggtgca 9026809  T
Q  198 aaatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaa 259  Q
    |||||||||         ||| ||||||| ||||||||||| |||||||||| |||||||||    
T  9026808 aaatcgctcaaaaaataaagg-ggtgcaaaattgcacaattaacaaaagataggaggaaaaa 9026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 3644721 - 3644795
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    ||||||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||||||||||||||||||    
T  3644721 gggtgcaaaatcgcacaattagcaagaggatagagggcaaaagtgcaattaaacacaaagatggggtgcaaaatc 3644795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 1101091 - 1101148
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  1101091 gggtgcaaaatcgcacaattgacaaaaagat-aggggcaaaagtgcaattaaacacaaa 1101148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 13657622 - 13657679
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||||  |||||||||| ||| ||||||||||||| |||||||    
T  13657622 gggtgcaaaatcgcacaattggcaaaaagataggggacaaaagtgcaattaaacacaa 13657679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 45060774 - 45060830
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||    
T  45060774 ggtgcaaaatcgaacaattggcaaaaagata-ggggcaaaagtgcaattgaacacaaa 45060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 4947433 - 4947377
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||||||| ||||||    
T  4947433 gtgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattgagcacaaa 4947377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3644784 - 3644832
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  3644784 gggtgcaaaatcgcacaattaacaaaaa-ataagggggaaaaatgcaatt 3644832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 10293910 - 10293958
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  10293910 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 10293958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 17372474 - 17372531
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||||  |||||||||| || |||||||||| ||| |||||||    
T  17372474 gggtgcaaaatcgcacaattggcaaaaagatagggtgcaaaagtgccattaaacacaa 17372531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 18874935 - 18874885
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattga 149  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||||    
T  18874935 gggtgcaaaatcgcacaattagc-aaaagatagggggaaaaagtgcaattga 18874885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 4947312 - 4947264
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||||||||||| ||| |||  ||||||||||||    
T  4947312 gggtgcaaaatcgcacaattaacaaaaa-ataggggtgaaaagtgcaatt 4947264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 14015873 - 14015926
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagata-aggggcaaaagtgcaattgaaca 152  Q
    ||||||||||||||||||  ||||||||||  ||||||||||||||||| ||||    
T  14015873 gtgcaaaatcgcacaattggcaaaaagataggggggcaaaagtgcaattaaaca 14015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 17440934 - 17440877
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||| |||||||||||||||  |||||| ||| ||||||||| ||||||| |||||||    
T  17440934 gggttcaaaatcgcacaattggcaaaaatatatggggcaaaaatgcaattaaacacaa 17440877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 18875192 - 18875240
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||| ||||||| ||||| |||| |||||||||||||||||    
T  18875192 gggtgcaaaatcgtacaattagcaaaa-gatagggggcaaaagtgcaatt 18875240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 20968771 - 20968723
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||| ||||||||    
T  20968771 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaggtgcaatt 20968723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 47665965 - 47665912
Alignment:
Q  218 gaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||| |||||||||    
T  47665965 gaggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagc 47665912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 3687525 - 3687709
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3687525 tataagtgagggtgtaaaatcgcacaattagcaaaaaaataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 3687624  T
Q  189 gat--ggtgcaaaatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||        |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  3687625 gatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 3687709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 9412193 - 9412378
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9412193 tataagtgagggtgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 9412292  T
Q  189 gat--ggtgcaaaatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||  |||||||||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  9412293 gatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 9412378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 6908390 - 6908498
Alignment:
Q  97 tgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat-ggtg 195  Q
    |||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6908390 tgggtgcaaaatcgcacaattagcaaaaagatagggggtaaaagcgcaattgaacacaaagatggggtgcaaaatcagaaaggaggcaaaaagatgggtg 6908489  T
Q  196 caaaatcgc 204  Q
    |||||||||    
T  6908490 caaaatcgc 6908498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 13772793 - 13772881
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 187  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  13772793 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgaaaaattagaaagggtgcaaaa 13772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 5349641 - 5349747
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    ||||||||| |||||||   |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  5349641 gtgcaaaattgcacaatatgcaaaaagatagggggcaaaagtgcaattgaatacaaagatggggtgcaaaatcagaaagggggtaaaaagatggggtgca 5349740  T
Q  198 aaatcgc 204  Q
    |||||||    
T  5349741 aaatcgc 5349747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 15567169 - 15567255
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 187  Q
    ||||||||| |||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15567169 tgcaaaatcacacaattagcaaaaagagagggggcaaacgtgcaattgaacacaaagatggggtgcaaaatcagaaagggtgcaaaa 15567255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 35080132 - 35080237
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 198  Q
    |||||||||||||||||| |  ||||||| ||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||  |||||||    
T  35080132 tgcaaaatcgcacaattagcttaaagatagggggcaaaagcacaattgaacacaaagatgaggtgcaaaatcagaaaggaggcaaaaagatggggtgcaa 35080231  T
Q  199 aatcgc 204  Q
    ||||||    
T  35080232 aatcgc 35080237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 33628554 - 33628466
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 187  Q
    |||||||||| ||||||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  33628554 ggtgcaaaattgcacaattagcaaaaagatagggtgcaaatgtgcaattgaacacaaggatggggtgcaaaatcagaaagggtgcaaaa 33628466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 34235856 - 34235966
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatg--gtg 195  Q
    |||||| |||||| ||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |  |||    
T  34235856 gggtgcgaaatcgaacaatttgaaaaaagatagggggcaaaagtgcaattaaacacaaagatggggtgcagaatcagaaatggggcaaaaagacggcgtg 34235955  T
Q  196 caaaatcgctc 206  Q
    |||||||||||    
T  34235956 caaaatcgctc 34235966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 9412076 - 9412028
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  9412076 gggtgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 9412028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 30857906 - 30857957
Alignment:
Q  220 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  30857906 ggtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagc 30857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 18925230 - 18925279
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||  |||||||||| ||||||||||| |||||    
T  18925230 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagttcaatt 18925279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 29291982 - 29292029
Alignment:
Q  160 ggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcgct 205  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  29291982 ggggtgcaaaatcagaaatggggcaaaaagatagggtgcaaaatcgct 29292029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 8953775 - 8953717
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    ||||||||||||||||| ||   ||||||||| ||| ||||||||||||| ||||||||    
T  8953775 gggtgcaaaatcgcacatttgctaaaaagataggggacaaaagtgcaattaaacacaaa 8953717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 27096216 - 27096170
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||    
T  27096216 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaatt 27096170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 27182087 - 27182133
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||    
T  27182087 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaatt 27182133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 5735429 - 5735372
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||||  |||||||||| || | |||||||||| | |||||||    
T  5735429 gggtgcaaaatcgcacaattggcaaaaagatagggagaaaaagtgcaaataaacacaa 5735372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 23686595 - 23686538
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||| ||||| ||| |||| | ||||||||| ||||||||||||||||| |||||||    
T  23686595 gggtgtaaaattgcaaaattgagaaaaagatagggggcaaaagtgcaattaaacacaa 23686538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 9412080 - 9412024
Alignment:
Q  215 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 9412024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 35080224 - 35080259
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataagggg 134  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35080224 gggtgcaaaatcgcacaattaac-aaaagataagggg 35080259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 38191435 - 38191388
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||||||||    
T  38191435 ggtgcaaaatcgcacaattggcaaaaagat-aggggaaaaagtgcaatt 38191388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 25247 - 25356
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||    
T  25247 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaatggggcaaaaagatggggtgc 25346  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  25347 aaaatcgctc 25356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 25370 - 25418
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  25370 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 25418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 11241558 - 11241662
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11241558 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgaaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 11241657  T
Q  189 gatgg 193  Q
    |||||    
T  11241658 gatgg 11241662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 3930348 - 3930466
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3930348 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattggacacaaagatggggtgcaaaatcagaaagggggcaaaaa 3930447  T
Q  189 gat--ggtgcaaaatcgct 205  Q
    |||  ||||||||||||||    
T  3930448 gatggggtgcaaaatcgct 3930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 16555695 - 16555804
Alignment:
Q  99 ggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgc 196  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||    
T  16555695 ggtgcaaaatcgcacaattagcaaaaagataagggggaaaagtgcaattgaacacaaagatggggtgtaaaatcagaaagggggcaaaaagatggggtgc 16555794  T
Q  197 aaaatcgctc 206  Q
    ||||||||||    
T  16555795 aaaatcgctc 16555804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 13198790 - 13198671
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13198790 tataagtgagggtgcaaaatcgcacaattagaaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaa 13198691  T
Q  189 gat--ggtgcaaaatcgctc 206  Q
    |||  |||||||||||||||    
T  13198690 gatggggtgcaaaatcgctc 13198671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 5206138 - 5206244
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgca 197  Q
    ||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5206138 gtgcaaaatcgcacaattagcaaaaagatagggggaagaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatagggtgca 5206237  T
Q  198 aaatcgc 204  Q
    |||||||    
T  5206238 aaatcgc 5206244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 22681754 - 22681662
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  22681754 gtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaattagaaa-ggggcaaaaagatgg 22681662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 35393651 - 35393558
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  35393651 gtgcaaaatcgcacaattagcaaaaagatagggggcaaaagttcaattgaacacaaagatagggtgcaaaatcaaaaagggggtaaaaagatgg 35393558  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 27304894 - 27304984
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  27304894 gggtgcaaaatcgcacaattagcaaaaagatagggggaaaaagtgcaattgaactcaaatatggggtgcaaaatcagaaaaggggcaaaaa 27304984  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 8488361 - 8488278
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggg 181  Q
    ||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8488361 gggtgcaaaattgcacaattagcaaaaacatagggggcaaaagtgcaattgaacacaaagacggggtgcaaaatcagaaagggg 8488278  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 49178693 - 49178636
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  49178693 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagtgcaattgaacacaa 49178636  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 24775696 - 24775633
Alignment:
Q  97 tgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatg 160  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||    
T  24775696 tgggtacaaaatcgcacaattgacaaaaatatagggggcaaaagtgcaattaaacacaaggatg 24775633  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 16555568 - 16555520
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  16555568 gggtgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 16555520  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 5206231 - 5206278
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  5206231 gggtgcaaaatcgcacaattaa--aaaagataagggggaaaagtgcaatt 5206278  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 8182045 - 8181996
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||  ||||| |||| |||||||||||||||||    
T  8182045 gggtgcaaaatcgcacaattggcaaaacgatagggggcaaaagtgcaatt 8181996  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 13198907 - 13198955
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  13198907 gggtgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 13198955  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 16555818 - 16555866
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  16555818 gggtgcaaaatcgcacaattagc-aaaagataagggggaaaagtgcaatt 16555866  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 22681881 - 22681932
Alignment:
Q  220 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| |||||||||    
T  22681881 ggtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagc 22681932  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 24775785 - 24775836
Alignment:
Q  220 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    ||||||| || ||||||||||||||||||| |||| |||||| |||||||||    
T  24775785 ggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagc 24775836  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 11241439 - 11241394
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||    
T  11241439 tgcaaaatcgcacaattaac-aaaagataaggaggaaaagtgcaatt 11241394  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 8182173 - 8182222
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| |||||| ||| |||  ||||||||||||    
T  8182173 gggtgcaaaatcgcacaattagcaaaaaaataggggtgaaaagtgcaatt 8182222  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 23432530 - 23432481
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||| ||| |||||||| ||||||| ||| |||||||||||||||||    
T  23432530 gggtgcagaattgcacaattgacaaaaaaatagggggcaaaagtgcaatt 23432481  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 7603296 - 7603352
Alignment:
Q  100 gtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 156  Q
    ||||||||||||||| ||   ||||||||| || |||||||||||||| ||||||||    
T  7603296 gtgcaaaatcgcacatttggtaaaaagatagggagcaaaagtgcaattaaacacaaa 7603352  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 16555572 - 16555516
Alignment:
Q  215 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 16555516  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 23433498 - 23433538
Alignment:
Q  231 gcacaattgacaaaagataagaggaaaaagttcaattaagc 271  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  23433498 gcacaattgacaaaagataagaggcagaagtgcaattaagc 23433538  T

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Target: scaffold0110 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 45684 - 45794
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  45684 gggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtg 45783  T
Q  196 caaaatcgctc 206  Q
    |||||||||||    
T  45784 caaaatcgctc 45794  T

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Target: scaffold0002 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 412090 - 411945
Alignment:
Q  106 aatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcg 203  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  412090 aatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatcagaaagggggcaaaaagatagggtgcaaaatcg 411991  T
Q  204 ctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagata 249  Q
    ||         |||| ||||||| || |||||||||||||||||||    
T  411990 cttaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagata 411945  T

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Target: scaffold1221 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 1667 - 1563
Alignment:
Q  89 tataagcgtgggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 188  Q
    |||||| | ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1667 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagagacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaataa 1568  T
Q  189 gatgg 193  Q
    |||||    
T  1567 gatgg 1563  T

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Target: scaffold0598 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 6752 - 6847
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 193  Q
    ||||||||||||  | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6752 gggtgcaaaatcatagaattagcaaaaaaataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggagcaaaaagatgg 6847  T

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Target: scaffold0001 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 439072 - 439001
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 172  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  439072 tgcaaaattgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 439001  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 183544 - 183598
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 155  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||| |||||||    
T  183544 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaaacacaa 183598  T

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Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 439203 - 439248
Alignment:
Q  101 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  439203 tgcaaaatcgcacaattagcaaaa-gataaggggaaaaagtgcaatt 439248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 438983 - 438935
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 147  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||    
T  438983 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 438935  T

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Target: scaffold0015 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 17030 - 16920
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtg 195  Q
    ||||||||||||| |||||||   |||||||| ||| |||||||||||||||||| ||||| || |||||||||||||||||| | ||||||||  ||||    
T  17030 gggtgcaaaatcgtacaattagagaaaagataggggacaaaagtgcaattgaacaaaaagacggagtgcaaaatcagaaagggaggaaaaagatggggtg 16931  T
Q  196 caaaatcgctc 206  Q
    |||||||||||    
T  16930 caaaatcgctc 16920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 73140 - 73086
Alignment:
Q  98 gggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaaca 152  Q
    ||||||||||||||||| || ||||||||||| ||| ||||||||||||| ||||    
T  73140 gggtgcaaaatcgcacagttgacaaaaagataggggacaaaagtgcaattaaaca 73086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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