View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_31 (Length: 390)
Name: NF18406_high_31
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 17738797 - 17739130
Alignment:
| Q |
12 |
atcatcacgttgagtgaagaacaatttgttttaactttaggcgatcttaaatcacctgagaatgatcacgttgagcgaacaacaattaaacaagttagnn |
111 |
Q |
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| T |
17738797 |
atcattacgttgagtgaagaacaatttgttctaactttaggtgatcttaaatcacctgagaatgatcacgttgagcgaacaacaattaaacaagttagtt |
17738896 |
T |
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| Q |
112 |
nnnnnng-gttacaggattaaacaagttaattagataccgtatctttctctaaaattttcaaacatcatattgttcaacacttatttttaatctaatgta |
210 |
Q |
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| T |
17738897 |
ttttttttgttacaggattaaacaagttagttagatatcgtatctttctctaaaattttcaaacatcatattgttcaacacttatttttaatctaatgta |
17738996 |
T |
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| Q |
211 |
cacgctgaatttcaacttaccgttaaaaatgtacggggtgtaggatttggaggaagaagtaatgaatgtcgttccaaaataggtcttgacccaacacgaa |
310 |
Q |
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| T |
17738997 |
cacgctgaatttcaacttaccgttaaaaatgtacggggtgtaggatttggaggaagaagtaatgaatgttgttccaaaataggtcttgacccaacacgaa |
17739096 |
T |
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| Q |
311 |
gtcggttttacctagagggtacacaatttgactc |
344 |
Q |
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| T |
17739097 |
gtcggttttacctagagggtacacaatttgactc |
17739130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 17738756 - 17738822
Alignment:
| Q |
32 |
acaatttgttttaactttaggcgatcttaaatcacctgagaatgatcacgttgagcgaacaacaatt |
98 |
Q |
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| T |
17738756 |
acaatttgttataattttaagcgatcttaaatcatctgagaatcattacgttgagtgaagaacaatt |
17738822 |
T |
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