View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_35 (Length: 378)
Name: NF18406_high_35
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 126 - 360
Target Start/End: Original strand, 8510530 - 8510764
Alignment:
| Q |
126 |
taatcttttcaagtccttcatggtgtttcttgataattcaatgcttagttttagggtggtcaggtgaatagatttctaaatcttagttgatgataagacc |
225 |
Q |
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| T |
8510530 |
taatcttttcaagtccttcatggtgtttcttgataattcaatgcttagttttagggtggtcaggtgcatagatttctaaatcttagttgatgataagacc |
8510629 |
T |
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| Q |
226 |
aaatgatacatacaaatgttgtccagtctgcttatcaatagcaattaatagccaaccattttgagatgtttcagatagttatggcatgagtatgtagagc |
325 |
Q |
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| T |
8510630 |
acgtgatacatacaaatgttgtgcagtctgcttatcaataacatttaatagccaaccattttgagatgtatcagatagttatggcatgagtttgtagagc |
8510729 |
T |
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| Q |
326 |
ttttgttgttgagatcaatacattctttatgagtt |
360 |
Q |
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| T |
8510730 |
ttttgttgttgagatcaatacattttttatgagtt |
8510764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 8510096 - 8510213
Alignment:
| Q |
15 |
acaaagaaccatgacatttatatattgctgcagaaaatattgtgtaaaattcttcatggtgtttcgtgacatttatttttaccatgcgatgtcattataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |
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| T |
8510096 |
acaaagaaccatgacatttatatattgctgcagaa--tattgtgtaaaattcttcattgtgtttcgggacatttatttttaccatacgatgtcattataa |
8510193 |
T |
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| Q |
115 |
aaagctatatataatctttt |
134 |
Q |
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| T |
8510194 |
aaagctatatataatctttt |
8510213 |
T |
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