View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_37 (Length: 364)
Name: NF18406_high_37
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 53803010 - 53802673
Alignment:
| Q |
16 |
attttatctttcgttaaggtgttgggtcgttagtccattatagtgtacctttcttacagtcaatgatcgtatgattggcaatatagagattcgtgaaatc |
115 |
Q |
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| T |
53803010 |
attttatctttcgctaaggtgttgggtcgtcagtccattataatgtacctttcttaaagtcaatgatcgtatgattgacaacatagagattcgtgaaatc |
53802911 |
T |
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| Q |
116 |
acgttgaaagtctctcaatgacttcaaccaaatttaccctaattcacatgaaaacttgtttataacaaaaccccttcacgagaagaaatttgcacattct |
215 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||| |
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| T |
53802910 |
acgttgagagtcgctcaatgacttcaaccaaatttaccctaattcacatgaaaacttatttataaaaggaccccttcaccagaagaaatttgcacattct |
53802811 |
T |
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| Q |
216 |
atttaaataatattgcattatatttaatcaaatactaactcgagcatcaaaatgtttgcaagtacatcatttctttcgcaaaacttcactattgttcttc |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53802810 |
atttcaataatattgcattatatttaatcaaatactaacttgagcatcaaagtgtttgcaaatacatcatttctttcgcaaaacttcactattgttcttc |
53802711 |
T |
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| Q |
316 |
actgaatgtattacttcgattcccacctcttaattctt |
353 |
Q |
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| |||||||||||||||||||||||||||||||||||| |
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| T |
53802710 |
attgaatgtattacttcgattcccacctcttaattctt |
53802673 |
T |
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