View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_38 (Length: 362)

Name: NF18406_high_38
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_38
NF18406_high_38
[»] chr3 (6 HSPs)
chr3 (1-353)||(2257167-2257523)
chr3 (3-116)||(52653524-52653636)
chr3 (9-112)||(50914667-50914769)
chr3 (3-50)||(23686025-23686072)
chr3 (3-50)||(24058262-24058309)
chr3 (21-100)||(33709591-33709670)
[»] chr5 (2 HSPs)
chr5 (3-116)||(36202866-36202978)
chr5 (10-116)||(11043029-11043134)
[»] chr8 (2 HSPs)
chr8 (3-116)||(12729141-12729253)
chr8 (31-116)||(28696338-28696422)
[»] chr4 (5 HSPs)
chr4 (3-115)||(20251147-20251258)
chr4 (3-97)||(122829-122922)
chr4 (9-118)||(48780114-48780221)
chr4 (19-116)||(24129597-24129693)
chr4 (32-116)||(1495028-1495110)
[»] chr7 (2 HSPs)
chr7 (9-116)||(12239877-12239982)
chr7 (45-116)||(24533198-24533269)
[»] chr6 (1 HSPs)
chr6 (9-116)||(28612400-28612504)
[»] chr2 (1 HSPs)
chr2 (3-116)||(34681354-34681466)
[»] chr1 (4 HSPs)
chr1 (3-79)||(49053555-49053630)
chr1 (3-79)||(49061135-49061210)
chr1 (3-85)||(42263734-42263817)
chr1 (26-100)||(12634262-12634334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-93)||(215647-215730)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 2257523 - 2257167
Alignment:
Q  1 agtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgttt------gacaattgaagc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||||||||| ||    
T  2257523 agtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattt-agagaaaagatgtattgtttttgtttgacaattga-gc 2257426  T
Q  95 aatgtaggcattcatgaacaaattttggatataacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatcacaaggcttcaa 194  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2257425 aatgtagtcactcatgaacaaattttggatattacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatcacaaggcttcaa 2257326  T
Q  195 tgaaatagttagcgaacgagacgggtgtgatgctcaatcgatccttccatgctacagagaccgggaacataaactcgacatcaaatacatcggatttgag 294  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||    
T  2257325 tgaaataggtagcgaacgtgacgggtgtgatgctcaatcgatcattccatgccacagagaccgggaacataaacttgacaacaaacacatcggatttgag 2257226  T
Q  295 aaaatttgattcttcgcacggttttcatccatattcacaactttcaactgttttcttct 353  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2257225 aaaatttgattcttcgcacggttttcatccatatccacaactttcaactgttttcttct 2257167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 52653524 - 52653636
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 102  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||      
T  52653524 tgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaatacc-ttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  103 cattcatgaacaaa 116  Q
    ||||||||||||||    
T  52653623 cattcatgaacaaa 52653636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 50914769 - 50914667
Alignment:
Q  9 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 108  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || |||||||||||||||||| |  ||||||    
T  50914769 agaaattttcaaaatatatttgaaaagttgcaatggttaaatagagacc-ttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattca 50914671  T
Q  109 tgaa 112  Q
    ||||    
T  50914670 tgaa 50914667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 50  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  23686025 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 50  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  24058262 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 33709591 - 33709670
Alignment:
Q  21 aatatatttgaaaagttgcaatgcttaaatagagaccattt-tagagaaaagatgtattgtttgacaattgaagcaatgta 100  Q
    |||||||||| |||||||||||| ||||| ||||||| ||| || | ||||| |||| || || |||||||||||||||||    
T  33709591 aatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 36202866 - 36202978
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 102  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||||||| |||||||      
T  36202866 tgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagacc-ttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaac 36202964  T
Q  103 cattcatgaacaaa 116  Q
    ||||||||||||||    
T  36202965 cattcatgaacaaa 36202978  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 11043134 - 11043029
Alignment:
Q  10 gaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcat 109  Q
    |||||||  ||||||||||||||||||| ||  | ||||||| ||| | ||||||||||||| |||| |||||| | ||| || |||| ||| |||||||    
T  11043134 gaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatc-ttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccattcat 11043036  T
Q  110 gaacaaa 116  Q
    |||||||    
T  11043035 gaacaaa 11043029  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 12729141 - 12729253
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 102  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||      
T  12729141 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagacc-ttttagagaaaaggtgtaatgctcgacaattgaagcaatataac 12729239  T
Q  103 cattcatgaacaaa 116  Q
    ||||||||| ||||    
T  12729240 cattcatgagcaaa 12729253  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 28696422 - 28696338
Alignment:
Q  31 aaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 116  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||| || || |||||||||||||||||  ||||||||||||||    
T  28696422 aaaagttgcaatgggtaaatagagatc-ttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 20251147 - 20251258
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 102  Q
    ||||| ||||||||  |||||||||||| |||||||||||  ||||||||||| | ||||||||||||  |||||||||||| ||||||| |||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatc-ttttagagaaaaagtgtattgtttgataattgaaacaatgtaac 20251245  T
Q  103 cattcatgaacaa 115  Q
     ||||||||||||    
T  20251246 tattcatgaacaa 20251258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaat 97  Q
    ||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| | ||||||||||||||  ||||||| |||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaataga-aacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 48780221 - 48780114
Alignment:
Q  9 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 108  Q
    ||||||||  |||||||||||| |||||||||||| ||||| | ||| | ||||||||||||| | || |||||||||||||||||||| ||   |||||    
T  48780221 agaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatc-ttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  109 tgaacaaatt 118  Q
    |||| |||||    
T  48780123 tgaataaatt 48780114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 24129693 - 24129597
Alignment:
Q  19 aaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 116  Q
    |||||||||||  ||||| |||||| ||||||| || |  |||| ||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||    
T  24129693 aaaatatatttagaaagtcgcaatggttaaatataggct-ttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccattcatgaacaaa 24129597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 1495110 - 1495028
Alignment:
Q  32 aaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 116  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||  | || ||| |||||||||| ||  ||||||||||||||    
T  1495110 aaagttgcaatggttaaa-agagaccattt-agagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaa 1495028  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 12239982 - 12239877
Alignment:
Q  9 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 108  Q
    ||||||||| ||||||||||||||| ||||||||| ||||| | ||||| |||||| |||||  ||||||| ||||||||||| ||||||||  ||||||    
T  12239982 agaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagacc-ttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  109 tgaacaaa 116  Q
    ||||||||    
T  12239884 tgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 24533198 - 24533269
Alignment:
Q  45 ttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 116  Q
    |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  24533198 ttaaatagagatttttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaa 24533269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 28612504 - 28612400
Alignment:
Q  9 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 108  Q
    ||||||||| ||||||||||| |||  ||| |||| |||||||||| || |||||||| |||| ||||||||||||||||||||||||| ||   |||||    
T  28612504 agaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggcc-ttttagagcaaaggtgtattgtttgacaattgaagcaatataacaattca 28612408  T
Q  109 tgaacaaa 116  Q
    ||||||||    
T  28612407 tgaacaaa 28612400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 34681466 - 34681354
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 102  Q
    ||||| ||||||||  |||||||||||| || ||||||||| ||||| | | ||| ||||||||||||  |||| ||||||||||||||||||||||       
T  34681466 tgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaacc-ttttagagaaaaagtgtaatgtttgacaattgaagcaatgttac 34681368  T
Q  103 cattcatgaacaaa 116  Q
    |||| |||||||||    
T  34681367 cattgatgaacaaa 34681354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 49053555 - 49053630
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 79  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| |||||| |||||||    
T  49053555 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaaaaggtgtattg 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 49061135 - 49061210
Alignment:
Q  3 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 79  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| ||| || |||||||    
T  49061135 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaataggtgtattg 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 42263817 - 42263734
Alignment:
Q  3 tgtgatagaaatttcaaaaatata--tttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgac 85  Q
    ||||| || |||||| ||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagaga-catttaagtgaaaagatgtattgcttgac 42263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 12634262 - 12634334
Alignment:
Q  26 atttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgta 100  Q
    ||||||||| |||||||| ||||||||||||  |||||  |||| ||| || |||||||| ||||||||||||||    
T  12634262 atttgaaaaattgcaatgattaaatagagac--ttttaatgaaaggatataatgtttgactattgaagcaatgta 12634334  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 215647 - 215730
Alignment:
Q  9 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaag 93  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||| | ||||  |||||| ||||| |||||||| |||||||    
T  215647 agaaatttccaaaatatatttagaaagttgcaatggttaaatagagatc-ttttgaagaaaatatgtaatgtttgacgattgaag 215730  T

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