View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_39 (Length: 361)
Name: NF18406_high_39
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 1587609 - 1587735
Alignment:
| Q |
17 |
tctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgta |
116 |
Q |
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| T |
1587609 |
tctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgta |
1587708 |
T |
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| Q |
117 |
cttgacaataatcaggtgatgttataa |
143 |
Q |
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| T |
1587709 |
cttgacaataaccaggtgatgttataa |
1587735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 1588267 - 1588362
Alignment:
| Q |
167 |
agttagcattgcaaaatgttttatagtatgttgcttttaaaaatttggctatgacaccttaagtgactagattattctccttgatcatgttggtcc |
262 |
Q |
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| T |
1588267 |
agttagcattgcaaaatgttttatagtatgttgcttttaaaaatttgactctgacaccttaagggactagattattctccttgatcatgttggtcc |
1588362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 1588389 - 1588450
Alignment:
| Q |
289 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgcttatgatgat |
350 |
Q |
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| T |
1588389 |
aaattgcttgaagataagctttaattgctttatggggtctgaattctactgcttatgatgat |
1588450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 1581156 - 1581243
Alignment:
| Q |
46 |
aaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgtacttgacaataatcaggt |
133 |
Q |
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| T |
1581156 |
aaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggt |
1581243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 1603659 - 1603572
Alignment:
| Q |
46 |
aaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgtacttgacaataatcaggt |
133 |
Q |
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| T |
1603659 |
aaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggt |
1603572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 19270170 - 19270050
Alignment:
| Q |
23 |
tggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgtacttgac |
122 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19270170 |
tggttggaaaactgttgtgagcaaaaatagttttgaaaagggtaaaaaacttaacatctggacttttagggtcaatgacaagttgcactttgtactcgac |
19270071 |
T |
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| Q |
123 |
aataatcaggtgatgttataa |
143 |
Q |
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| T |
19270070 |
aataatcaggtgatgttataa |
19270050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 19268331 - 19268279
Alignment:
| Q |
210 |
tttggctatgacaccttaagtgactagattattctccttgatcatgttggtcc |
262 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19268331 |
tttgactatgacaccttaaatgactagattattctccttgatcatgttggtcc |
19268279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 19268252 - 19268198
Alignment:
| Q |
289 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgctta |
343 |
Q |
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| T |
19268252 |
aaattgcttgaaaataagctttgattgctttatagggtttgaattctactgctta |
19268198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 39615029 - 39614941
Alignment:
| Q |
176 |
tgcaaaatgttttatagtatgttgcttttaaaaatttggctatgacaccttaagtga--ctagattattctccttgatcatgttggtcc |
262 |
Q |
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| T |
39615029 |
tgcaaaatgttttatattatgttgcttttaacaatttgactatgacaccttaggtgactctacattattttccttgatcatgttggtcc |
39614941 |
T |
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