View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_4 (Length: 611)
Name: NF18406_high_4
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Complemental strand, 34095870 - 34095277
Alignment:
| Q |
16 |
aagagaacatgaataacatttttaattacaagattaaggagctaactttatcataaaatttgatgtacatcaa------aaagatgttaaattaataatc |
109 |
Q |
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| T |
34095870 |
aagagaacatgaataacatttttaattacaagattaaggagctaacttcatcataaaatttgatgtacataaacaaaaaaaaaatgttaaattaataatc |
34095771 |
T |
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| Q |
110 |
tccatgatctaatcatgaatcaatgtcatgaaataaacttaaacacgtttaaaacaaaaaggattaaagtaaatgacattgattaaattaaatatattat |
209 |
Q |
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| T |
34095770 |
tccatgatctaatcatgaatcaatgtcatgaaataaacttaaacacgtttaaaacaaaaaggattaaagtaaatgacattgattaaattaaatatattat |
34095671 |
T |
|
| Q |
210 |
accttgaggcaaagatcaaaaggttgagagtgaagaagatttggcattgaagagagctctttagaaggctcaaaagggtttctactactacaaagtagtg |
309 |
Q |
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| T |
34095670 |
accttgaggcaaagatcaaaaggttgagagtgatgaagatttggcattgaagagagctctttagaaggctcaaaagggtttctactactacaaagtagtg |
34095571 |
T |
|
| Q |
310 |
aaccagatccatagttaccgccaccaacaacaaccctgttgttaatgttattctgattctgattgtgattgttaggcacaatccatccagcaccaacgtt |
409 |
Q |
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| T |
34095570 |
aaccagatccatagttaccaccaccaacaacaaccctgtttttaatgttattctgattctgattctgattgttaggcacaatccatccagcaccaacgtt |
34095471 |
T |
|
| Q |
410 |
agaaccaacaaaaggaacataaccagaaccaaccaaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactga |
509 |
Q |
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| T |
34095470 |
agaaccaacaaaaggaacataaccagaaccaaccaaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactga |
34095371 |
T |
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| Q |
510 |
aatggcccagttggtgaaaatgcaccatacttcaaaacctgttgttgttgatgaggaagatcaaagtgttttttcatcaatgccgctatcctatgct |
606 |
Q |
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| T |
34095370 |
aatggcccagttggtgaaaatgcaccatacttcaaaacctgtt---gttgatgaggaagatcaaagtgttttttcatcaatgccgctatcctctgct |
34095277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 545
Target Start/End: Original strand, 12294560 - 12294624
Alignment:
| Q |
481 |
tcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaa |
545 |
Q |
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| T |
12294560 |
tcatcatcacttgttgttgaggaaactgaaatgacacatttgatgataatgcaccatacctcaaa |
12294624 |
T |
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