View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_high_42 (Length: 342)
Name: NF18406_high_42
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 36188279 - 36188601
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188279 |
acagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctta |
36188378 |
T |
|
| Q |
101 |
gttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188379 |
gttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctc |
36188478 |
T |
|
| Q |
201 |
tgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188479 |
tgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgta |
36188578 |
T |
|
| Q |
301 |
gatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36188579 |
gatgtgagcaatatcttgcaacc |
36188601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 36196596 - 36196919
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
99 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36196596 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36196695 |
T |
|
| Q |
100 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36196696 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36196795 |
T |
|
| Q |
200 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36196796 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
36196895 |
T |
|
| Q |
300 |
agatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36196896 |
agatgtgagcaatatcttgcaacc |
36196919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 36209720 - 36210034
Alignment:
| Q |
1 |
acagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36209720 |
acagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatctt |
36209819 |
T |
|
| Q |
100 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
199 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
36209820 |
agttcatctataactgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatct |
36209918 |
T |
|
| Q |
200 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36209919 |
ctgctacaaacgctcttgttggaagaaaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgt |
36210010 |
T |
|
| Q |
300 |
agatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
36210011 |
agatgtcagcaatatcttgcaacc |
36210034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 158 - 323
Target Start/End: Original strand, 36202310 - 36202475
Alignment:
| Q |
158 |
tccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaa |
257 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||| |
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|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
258 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatcttgcaacc |
36202475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 36207688 - 36207947
Alignment:
| Q |
65 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
163 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
164 |
cgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttat |
262 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || | ||| | || |||||||||||| ||||||||||||||| | |||||||| ||||||| |
|
|
| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttat |
36207886 |
T |
|
| Q |
263 |
gaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
||||||||| || | |||||| ||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
36207887 |
caaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatcttgcaacc |
36207947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 36184500 - 36184763
Alignment:
| Q |
65 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
159 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
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|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
160 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
258 |
Q |
| |
|
| | ||| | ||||||||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
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|
| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
36184698 |
T |
|
| Q |
259 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
36184699 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaacc |
36184763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 36213218 - 36213376
Alignment:
| Q |
165 |
gatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatga |
264 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
265 |
accttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
36213318 |
gccttcatttgattggataaaacctccacacttgtagatgtgagtaatatcttgcaacc |
36213376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 90 - 323
Target Start/End: Original strand, 36200857 - 36201090
Alignment:
| Q |
90 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgatt |
189 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| ||| || |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagtt |
36200955 |
T |
|
| Q |
190 |
ttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacc |
288 |
Q |
| |
|
||| ||| ||||||| ||||| ||| || |||| |||| |||| |||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
36200956 |
ttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttgttcggataaaacc |
36201055 |
T |
|
| Q |
289 |
tccaaacttgtagatgtgagcaatatcttgcaacc |
323 |
Q |
| |
|
|||| |||| ||| ||||||||||| ||||||||| |
|
|
| T |
36201056 |
tccacacttttaggtgtgagcaataccttgcaacc |
36201090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
102 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
183 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
91 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
190 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
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|
| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
191 |
tcatcatctctgc |
203 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 323
Target Start/End: Original strand, 36198962 - 36199068
Alignment:
| Q |
218 |
ttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaac------ttgtagatgtgagcaa |
311 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||| |||||||| |||||||||||||||| |
|
|
| T |
36198962 |
ttggaagataatcatgtcatgtct-----agttgtatcaagttatgaaccttcatttgtttggataaaatctccaaacttgtagttgtagatgtgagcaa |
36199056 |
T |
|
| Q |
312 |
tatcttgcaacc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36199057 |
tatcttgcaacc |
36199068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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