View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_high_43 (Length: 342)
Name: NF18406_high_43
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 16339210 - 16338904
Alignment:
| Q |
20 |
atatttgaatgttgatcaaactcatcagaaacttgagcattgaagggtaattcaacaatttcaactttacttcggctactactaccatccaaccgcaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16339210 |
atatttgaatgttgatcaaactcatcagaaacttgagcattgaagggtaattcaacaatttcaactttacttcggctactactaccatccaaccgcaaac |
16339111 |
T |
|
| Q |
120 |
aataatgttccaagctagatacaaggatgaccccacaaccctttatccccttagttgacgacaattgttcccagtctttaccataaagttcgacttcaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16339110 |
aataatgttccaagctagatacaaggatgaccccacaaccctttatccccttagttgacgacaattgttcccagtctttaccataaagttcgacttcaaa |
16339011 |
T |
|
| Q |
220 |
tgaaagcctgtaatgatcattatccgccctcgtctgatggtaaataccgccagacgaactgaatagcattacatggtctgaaatcattgccccgctcaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16339010 |
tgaaagcctgtaatgatcattatccgccctcgtctgatggtaaataccgccagacgaactgaatagcattacatggtctgaaatcattgccccgctcaca |
16338911 |
T |
|
| Q |
320 |
tgctcaa |
326 |
Q |
| |
|
||||||| |
|
|
| T |
16338910 |
tgctcaa |
16338904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 16119978 - 16120275
Alignment:
| Q |
20 |
atatttgaatgttgatcaaactcatcagaaacttga---gcattgaagggtaattcaacaatttcaactttacttcggctactactaccatccaaccgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16119978 |
atatttgaatgttgatcaaactcatcagaaacttgatgagcattgaagggtaattcaacaatttcaactttacttcggctactactaccatccaacccca |
16120077 |
T |
|
| Q |
117 |
aacaataatgttccaagctagatacaaggatgaccccacaaccctttatccccttagttgacgacaattgttcccagtctttaccataaagttcgacttc |
216 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||| |
|
|
| T |
16120078 |
aactac---gttccaagctaggtacaaggatgaccccacaaccctttatccccttagttgacgacaattgttccccgactttaccataaggtttgacttc |
16120174 |
T |
|
| Q |
217 |
aaatgaaagcctgtaatgatcattatccgccctcgtctgatggtaaataccgccagacgaactgaatagcattacatggtctgaaatcattgccccgctc |
316 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| ||||| ||| ||||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16120175 |
aaatgaaaggctgtaatgatcattatccaccctcgtctgatggcaaata---gcaggcgaacagattagcagtacatggtctgaaatcattgccccgctc |
16120271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 12898668 - 12898522
Alignment:
| Q |
26 |
gaatgttgatcaaactcatcagaaacttgagcattgaagggtaattcaacaatttcaactttacttcggctactactaccatccaaccgcaaacaataat |
125 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| | |||||||||||||||| ||| |||| | || | ||||| ||||| || ||| || |
|
|
| T |
12898668 |
gaatgttgatcagactcatcagagacttgagcattggattgtaattcaacaatttctact---cttctattgcttcgaccattcaacccca---aattat |
12898575 |
T |
|
| Q |
126 |
gttccaagctagatacaaggatgaccccacaaccctttatccccttagttgac |
178 |
Q |
| |
|
||||||||| | | ||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
12898574 |
gttccaagccataaacagggaagatcccacaaccctttatccccttagttgac |
12898522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 36021997 - 36022038
Alignment:
| Q |
127 |
ttccaagctagatacaaggatgaccccacaaccctttatccc |
168 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
36021997 |
ttccaagctatatacagggaggaccccacaaccctttatccc |
36022038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University