View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_44 (Length: 341)

Name: NF18406_high_44
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_44
NF18406_high_44
[»] chr7 (27 HSPs)
chr7 (19-330)||(24391067-24391378)
chr7 (217-330)||(24385052-24385165)
chr7 (26-78)||(19637581-19637633)
chr7 (19-78)||(24384848-24384907)
chr7 (31-78)||(46769039-46769086)
chr7 (28-78)||(22021051-22021101)
chr7 (33-78)||(24383803-24383848)
chr7 (33-85)||(19779275-19779327)
chr7 (30-78)||(22036771-22036819)
chr7 (31-78)||(16846801-16846848)
chr7 (23-78)||(22534303-22534358)
chr7 (31-78)||(26217632-26217679)
chr7 (31-78)||(26229882-26229929)
chr7 (31-78)||(26237279-26237326)
chr7 (33-79)||(16839717-16839763)
chr7 (33-75)||(20414576-20414618)
chr7 (33-75)||(20456193-20456235)
chr7 (204-261)||(14076542-14076599)
chr7 (204-261)||(14386570-14386627)
chr7 (26-75)||(19351400-19351449)
chr7 (28-69)||(22028323-22028364)
chr7 (47-80)||(22039899-22039932)
chr7 (26-78)||(18953269-18953321)
chr7 (26-78)||(18983316-18983368)
chr7 (26-78)||(18997962-18998014)
chr7 (33-85)||(19888056-19888108)
chr7 (26-78)||(22473477-22473529)
[»] chr6 (6 HSPs)
chr6 (126-292)||(24950264-24950427)
chr6 (221-268)||(6921509-6921556)
chr6 (19-57)||(24950446-24950484)
chr6 (19-68)||(24955888-24955937)
chr6 (30-78)||(33568660-33568708)
chr6 (221-268)||(6943113-6943160)
[»] chr1 (2 HSPs)
chr1 (23-75)||(39379425-39379477)
chr1 (24-75)||(17561110-17561162)
[»] scaffold0128 (3 HSPs)
scaffold0128 (27-78)||(8269-8320)
scaffold0128 (26-78)||(3830-3882)
scaffold0128 (26-78)||(25317-25369)
[»] chr4 (4 HSPs)
chr4 (26-75)||(3565401-3565450)
chr4 (27-75)||(1686649-1686697)
chr4 (29-75)||(3557386-3557432)
chr4 (26-78)||(3561319-3561371)
[»] scaffold0707 (1 HSPs)
scaffold0707 (30-78)||(5054-5102)
[»] chr5 (1 HSPs)
chr5 (26-78)||(42297807-42297859)
[»] scaffold0097 (2 HSPs)
scaffold0097 (217-268)||(16531-16582)
scaffold0097 (29-78)||(16712-16761)
[»] chr2 (4 HSPs)
chr2 (217-268)||(20712692-20712743)
chr2 (31-78)||(20975226-20975273)
chr2 (29-78)||(20712873-20712922)
chr2 (26-78)||(18921088-18921140)
[»] chr3 (1 HSPs)
chr3 (31-75)||(36339792-36339836)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 24391067 - 24391378
Alignment:
Q  19 tagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391067 tagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgt 24391166  T
Q  119 cgtggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391167 cgtggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcga 24391266  T
Q  219 tcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctcat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24391267 tcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccgtgaagtgttgttgaatgagtcaaccatttgtgtgctcat 24391366  T
Q  319 ggattgcctttg 330  Q
    ||||||||||||    
T  24391367 ggattgcctttg 24391378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 24385052 - 24385165
Alignment:
Q  217 gatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctc 316  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||  || |||  |||||||||||||||||||  |||   ||||||||||     
T  24385052 gatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaagtgttgttgaatgaaacaagtctttgtgtgctt 24385151  T
Q  317 atggattgcctttg 330  Q
    ||||||||||||||    
T  24385152 atggattgcctttg 24385165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 19637633 - 19637581
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  19637633 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 19637581  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 24384848 - 24384907
Alignment:
Q  19 tagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||||||  |||||||||||||| ||| |||||||||||| |||||||||||||||    
T  24384848 tagagatgtgaaggtttttagtttgggagatgatatttggagaagtattcaaagttttcc 24384907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 46769039 - 46769086
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  46769039 agttttgagtgtgggtgataatatttggagaactattcaaagttttcc 46769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 22021051 - 22021101
Alignment:
Q  28 gagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22021101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 24383803 - 24383848
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||    
T  24383803 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 24383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 19779275 - 19779327
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 85  Q
    |||| |||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcccattgtt 19779327  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 22036771 - 22036819
Alignment:
Q  30 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22036819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 16846848 - 16846801
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  16846848 agtttttagtctgggcgataatgcttggagaaatattcaaagttttcc 16846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 22534303 - 22534358
Alignment:
Q  23 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  22534303 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 22534358  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 26217632 - 26217679
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26217632 agtttttagtttgggtggtaactcttggagaaatattcaaagttttcc 26217679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 26229882 - 26229929
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26229882 agtttttagtttgggtggtaactgttggagaaatattcaaagttttcc 26229929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 26237279 - 26237326
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26237279 agtttttagtttgggtgttaactgttggagaaatattcaaagttttcc 26237326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 16839763 - 16839717
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttttccc 79  Q
    |||||||| |||| ||||| | |||||||||||||||||||||||||    
T  16839763 tttttagtctgggcgataacacttggagaaatattcaaagttttccc 16839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 20414576 - 20414618
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||||||||||||||| ||||||||| |||| |||||||    
T  20414576 tttttagtttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 20456193 - 20456235
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  20456193 tttttagtttgggtgataatgtttggagaagtattcaatgttt 20456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 14076542 - 14076599
Alignment:
Q  204 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 261  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14076599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 14386570 - 14386627
Alignment:
Q  204 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 261  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14386627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 19351449 - 19351400
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||| ||||||||||||| |||||||| |||||||| |||||| ||||||    
T  19351449 gtgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 22028323 - 22028364
Alignment:
Q  28 gagagtttttagtttgggtgataatatttggagaaatattca 69  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  22028323 gagagtttttagtttgggcgataatgtttggaggaatattca 22028364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 22039899 - 22039932
Alignment:
Q  47 gataatatttggagaaatattcaaagttttccca 80  Q
    |||||| |||||||||||||||||||||||||||    
T  22039899 gataatgtttggagaaatattcaaagttttccca 22039932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18953321 - 18953269
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18953321 gtgagagttttcaattttggcgataatgtttggagacatattcaaagttttcc 18953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18983368 - 18983316
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18983368 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18983316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18998014 - 18997962
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18998014 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18997962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 19888108 - 19888056
Alignment:
Q  33 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 85  Q
    ||||||||||| ||||||||||||||||| ||||||  | |||||||| ||||    
T  19888108 tttttagtttgagtgataatatttggagagatattccgaattttcccattgtt 19888056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 22473529 - 22473477
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||| || ||||||||||||||| ||||||||||  ||||||| |||||    
T  22473529 gtgagagtcttcagtttgggtgataatgtttggagaaaacttcaaagatttcc 22473477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 24950427 - 24950264
Alignment:
Q  126 gtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatcatctc 225  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||   | ||| |||   |   ||||| ||| ||||||||||||    
T  24950427 gtgtgtatttgagcggaactcttaattggttggtcattcgaaatgatattacatatgat---tggaataatcatactgttgagaattttgcgatcatctc 24950331  T
Q  226 acttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttg 292  Q
    |||||||| | ||| ||||||||||| |||||||||||||||| ||| |||  |||||| |||||||    
T  24950330 acttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaagggttgttg 24950264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 6921556 - 6921509
Alignment:
Q  221 atctcacttgatttggggatagagacatacacacaattgttgccccct 268  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  6921556 atctcacttgatttggggacagagacatatacacaattgttgctccct 6921509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 24950484 - 24950446
Alignment:
Q  19 tagagatgtgagagtttttagtttgggtgataatatttg 57  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24950484 tagagaggtgagagtttttagtttgggtgataatatttg 24950446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24955937 - 24955888
Alignment:
Q  19 tagagatgtgagagtttttagtttgggtgataatatttggagaaatattc 68  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  24955937 tagagaggtgagagtttttagtttgggggataatatctggagagatattc 24955888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 33568660 - 33568708
Alignment:
Q  30 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  33568660 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 33568708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 6943160 - 6943113
Alignment:
Q  221 atctcacttgatttggggatagagacatacacacaattgttgccccct 268  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  6943160 atctcacttgatttggggacagagacatatacaaaattgttgctccct 6943113  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  23 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 17561162 - 17561110
Alignment:
Q  24 atgtgagagttttta-gtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||| |||||| |||||||||||||  |||||||| |||||||||||||    
T  17561162 atgtgagaatttttaagtttgggtgataacgtttggagagatattcaaagttt 17561110  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 8269 - 8320
Alignment:
Q  27 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  8269 tgagagtctttagtttgggtgataatgtttggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 3830 - 3882
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||||||||||||||   ||||| ||||||||| ||||| |||||||||    
T  3830 gtgagagtttttagtttggcgaataatgtttggagaactattccaagttttcc 3882  T

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Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 25317 - 25369
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||| ||| |||||||||||||||||| |||||||| |||||| ||| |||||    
T  25317 gtgaaagtctttagtttgggtgataatgtttggagacatattcgaagatttcc 25369  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 3565401 - 3565450
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3565401 gtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  27 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 3557386 - 3557432
Alignment:
Q  29 agagtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3557386 agagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 3561371 - 3561319
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||| |||  |||| ||||||||| |||||||||||||| ||||||||||    
T  3561371 gtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcc 3561319  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 5054 - 5102
Alignment:
Q  30 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  5054 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 5102  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||| ||||||||||  |||||| ||||||||| |||||||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 16582 - 16531
Alignment:
Q  217 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 268  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  16582 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 16531  T

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Target: scaffold0097; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 16761 - 16712
Alignment:
Q  29 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  16761 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 16712  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 20712743 - 20712692
Alignment:
Q  217 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 268  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  20712743 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 20712692  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 20975226 - 20975273
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||| | |||||| || |||||||||||||||||||||||||||||    
T  20975226 agttttcactttgggcgaaaatatttggagaaatattcaaagttttcc 20975273  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 20712922 - 20712873
Alignment:
Q  29 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  20712922 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 20712873  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18921140 - 18921088
Alignment:
Q  26 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 78  Q
    |||| |||||| |||||| |||||||| |||||||  ||||||||||||||||    
T  18921140 gtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttttcc 18921088  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 36339792 - 36339836
Alignment:
Q  31 agtttttagtttgggtgataatatttggagaaatattcaaagttt 75  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagttt 36339836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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