View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_53 (Length: 321)

Name: NF18406_high_53
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_53
NF18406_high_53
[»] chr1 (1 HSPs)
chr1 (18-309)||(48393336-48393627)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 48393336 - 48393627
Alignment:
Q  18 gtttgttgcaaccgctgatcagagcgttatttcaatcactctgtgcaaaattcaatcgccatggccgtcgatatcttaaccttagaaaacaggtacattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48393336 gtttgttgcaaccgctgatcagagcgttatttcaatcactctgtgcaaaattcaatcgccatggccgtcgatatcttaaccttagaaaacaggtacattt 48393435  T
Q  118 cgtcaactccaaaatattcaaaatgcactatcaattatactgctcatttaatattattcactttaatttctttcatattttcgtattgactttggtttga 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48393436 cgtcaactccaaaatattcaaaatgcactatcaattacactgctcatttaatattattcactttaatttctttcatattttcgtattgactttggtttga 48393535  T
Q  218 tgttagaacatggatagtgattactttcacttgttcgctcttaatatcaatttaattgaacgttaattgtttgaattagttacttgatgatg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48393536 tgttagaacatggatagtgattactttcacttgttcgctcttaatatcaatataattgaacgttaattgtttgaattagttacttgatgatg 48393627  T

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