View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_56 (Length: 316)

Name: NF18406_high_56
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_56
NF18406_high_56
[»] chr1 (1 HSPs)
chr1 (9-301)||(32652931-32653223)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 32653223 - 32652931
Alignment:
Q  9 agcacagactcggcaacaaacccaagaatatgagtcatatccatcatnnnnnnngcacctacttcatctgctatctttccttgcataaaagatgcaatta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  32653223 agcacagactcggcaacaaacccaagaatatgagtcatatccatcataaaaaaagcacctacttcatctgctatctttccttgcataaaagatgcaatta 32653124  T
Q  109 gtttatcgcaaggaataaaatcacattgtatatagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataatcgacgtctggagga 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32653123 gtttatcgcaaggaataaaatcacattgtatacagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataattgacgtctggagga 32653024  T
Q  209 tacacactaacagcaatgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttat 301  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32653023 tacacactagcaacaatgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttat 32652931  T

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