View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_6 (Length: 586)
Name: NF18406_high_6
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 21608625 - 21609007
Alignment:
| Q |
1 |
acaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatcagagattgta |
100 |
Q |
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| T |
21608625 |
acaaattgacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatcagagattgta |
21608724 |
T |
|
| Q |
101 |
caaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtgttgtta |
200 |
Q |
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| T |
21608725 |
tatggagaaagagagcgaaaacaattaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtatcgtta |
21608824 |
T |
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| Q |
201 |
tcgtattttggcttactctttgacctaaatccatgtccagcaaagtnnnnnnncaa-gtat-ccccgctttaaggttcttaaacaaatccagcaacagtg |
298 |
Q |
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| T |
21608825 |
tcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatcccccgctttaaggttcttaaacaaatccagcaacaatg |
21608924 |
T |
|
| Q |
299 |
tcaaaagggttgtgtgggtgacaacacttggttttatttcaaaatta----ttggaggacatgccatcgtcggatattcatcta |
378 |
Q |
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| T |
21608925 |
tcaaaagggttgcgtgggtgacaacactt-gttttatttcaaaattattttttggaggacaaaccatcgacggatattcatcta |
21609007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 21608023 - 21607640
Alignment:
| Q |
1 |
acaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatcagagattgta |
100 |
Q |
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||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| || |
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| T |
21608023 |
acaaattaacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatcagagatttta |
21607924 |
T |
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| Q |
101 |
caaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtgttgtta |
200 |
Q |
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| T |
21607923 |
tatggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacataactagtgtcgtta |
21607824 |
T |
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| Q |
201 |
tcgtattttggcttactctttgacctaaatccatgtccagcaaagtnnnnnnncaa-gtatc-cccgctttaaggttcttaaacaaatccagcaacagtg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| || |
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| T |
21607823 |
tcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatcacccgctttaaggttcttaaacaaatccagcaacaatg |
21607724 |
T |
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| Q |
299 |
tcaaaagggttgtgtgggtgacaacacttggttttatttcaaaa----ttattggaggacatgccatcgtcggatattcatcta |
378 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||| || ||| |||| | ||||||| |||||||||||||| |
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| T |
21607723 |
tcaaaagggttgcgtgggtgacaacacttgattttatttcaaaataattttttgaaggagaagccatcgacggatattcatcta |
21607640 |
T |
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