View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_65 (Length: 295)

Name: NF18406_high_65
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_65
NF18406_high_65
[»] chr7 (1 HSPs)
chr7 (4-295)||(41859796-41860087)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 41860087 - 41859796
Alignment:
Q  4 atgtcgaagaatatcattttcctatcaaagattttaaacatggtggattagaaaaatatattatataaaaagggataagtaattgtctatatttagggag 103  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860087 atgtctaagaatatcattttcgtatcaaagattttaaccatggtggattagaaaaatatattatataaaaagggataagtaattgtctatatttagggag 41859988  T
Q  104 gaaattacttaccaagatgaaaacgttgagatctttatctgagatgttgactgcatcttgattctcatttctttggaactcaagcaagacatccaagaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859987 gaaattacttaccaagatgaaaacgttgagatctttatctgagatgttgactgcatcttgattctcatttctttggaactcaagcaagacatccaagaaa 41859888  T
Q  204 tctcttgatttctcatcacgttccacttccaaatccaaacgctctttcacaaacgtggaagcaatttcaatagcttttcccatatccctgtc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859887 tctcttgatttctcatcacgttccacttccaaatccaaacgctctttcacaaacgtggaagcaatttcaatagcttttcccatatccctgtc 41859796  T

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