View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_66 (Length: 295)
Name: NF18406_high_66
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 40030173 - 40029903
Alignment:
| Q |
1 |
tgtgcttatcttgtttgcaaaccccatagaattaataaagctaagctcaattttcataattaaatatcatcaacacatccattttatcatgttgtgttga |
100 |
Q |
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| T |
40030173 |
tgtgcttatcttgtttgcaaaccccatagaattaataaagctaagctcaattttcataattaaatatca---acacatccattttatcatgttg-----a |
40030082 |
T |
|
| Q |
101 |
ctaagctactttttctttcttaattaaatattcattcagttaggacttaagagacacgcattctgcgtttatttcttctaatttctcccttacattgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40030081 |
ctaagctactttttctttcttaattaaatattcattcagttaggacttaagagacacgcattctgcgtttatttcttctaatttctcccttacattgttg |
40029982 |
T |
|
| Q |
201 |
aaattgttagcagtattatgctgagtggggatattgaactttggacctccttatcaaattactttcatttcacatatat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40029981 |
aaattgttagcagtattatgctgagtggggatattgaactttggacctccttatcaaattactttcatttcacatatat |
40029903 |
T |
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