View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_67 (Length: 290)

Name: NF18406_high_67
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_67
NF18406_high_67
[»] chr4 (27 HSPs)
chr4 (40-290)||(28929562-28929812)
chr4 (51-138)||(602542-602629)
chr4 (181-228)||(37980145-37980192)
chr4 (181-228)||(56409982-56410029)
chr4 (147-240)||(29195093-29195186)
chr4 (148-231)||(4088242-4088324)
chr4 (149-224)||(38206127-38206201)
chr4 (209-289)||(5609267-5609347)
chr4 (181-281)||(13771555-13771656)
chr4 (156-228)||(37492715-37492785)
chr4 (181-281)||(40058925-40059025)
chr4 (181-228)||(21344848-21344895)
chr4 (181-228)||(25434656-25434703)
chr4 (149-227)||(37109349-37109427)
chr4 (181-227)||(7093400-7093446)
chr4 (208-281)||(34844831-34844904)
chr4 (181-219)||(42281240-42281278)
chr4 (181-281)||(25852238-25852338)
chr4 (181-222)||(31141347-31141388)
chr4 (156-240)||(37455576-37455660)
chr4 (181-240)||(5998672-5998732)
chr4 (181-260)||(13873388-13873468)
chr4 (156-240)||(32475080-32475163)
chr4 (210-281)||(32990488-32990559)
chr4 (181-228)||(32992643-32992691)
chr4 (58-86)||(36837776-36837804)
chr4 (181-228)||(46295128-46295176)
[»] chr5 (13 HSPs)
chr5 (181-283)||(15485362-15485464)
chr5 (156-229)||(16172980-16173052)
chr5 (181-282)||(33025504-33025606)
chr5 (181-220)||(16247135-16247174)
chr5 (181-283)||(19145482-19145584)
chr5 (181-228)||(31669022-31669069)
chr5 (158-224)||(14656645-14656710)
chr5 (232-289)||(22253209-22253266)
chr5 (181-281)||(32059513-32059613)
chr5 (181-222)||(32340340-32340381)
chr5 (181-277)||(36895449-36895545)
chr5 (188-224)||(8780509-8780545)
chr5 (181-251)||(16773838-16773910)
[»] chr3 (22 HSPs)
chr3 (193-285)||(27887464-27887557)
chr3 (181-227)||(31714348-31714394)
chr3 (151-229)||(42799744-42799821)
chr3 (181-230)||(18316494-18316543)
chr3 (207-281)||(7470288-7470362)
chr3 (149-228)||(11092167-11092245)
chr3 (148-283)||(34844370-34844504)
chr3 (147-228)||(40268487-40268567)
chr3 (181-225)||(35623267-35623311)
chr3 (207-281)||(53288785-53288859)
chr3 (181-258)||(7485620-7485698)
chr3 (151-228)||(19716199-19716276)
chr3 (232-282)||(39604682-39604732)
chr3 (181-227)||(53863866-53863912)
chr3 (181-289)||(30257648-30257756)
chr3 (182-227)||(40777045-40777090)
chr3 (181-229)||(54990733-54990782)
chr3 (181-229)||(7207641-7207689)
chr3 (156-228)||(15034352-15034423)
chr3 (181-228)||(16900678-16900726)
chr3 (148-228)||(43303757-43303836)
chr3 (181-225)||(50162067-50162111)
[»] chr7 (13 HSPs)
chr7 (149-228)||(25956290-25956368)
chr7 (147-241)||(43215182-43215277)
chr7 (205-289)||(1469164-1469248)
chr7 (149-227)||(33869443-33869521)
chr7 (208-281)||(36772376-36772448)
chr7 (149-228)||(5579231-5579310)
chr7 (184-251)||(25132352-25132420)
chr7 (149-227)||(26459408-26459486)
chr7 (181-281)||(2751299-2751399)
chr7 (180-225)||(22696347-22696392)
chr7 (181-228)||(22760894-22760942)
chr7 (181-225)||(28646997-28647041)
chr7 (184-228)||(46279048-46279092)
[»] chr2 (18 HSPs)
chr2 (181-228)||(6099516-6099563)
chr2 (148-225)||(43963989-43964065)
chr2 (181-229)||(26482124-26482172)
chr2 (181-283)||(26176268-26176370)
chr2 (148-228)||(29503270-29503350)
chr2 (180-225)||(32526214-32526259)
chr2 (181-229)||(3697396-3697444)
chr2 (181-225)||(8192480-8192524)
chr2 (149-251)||(42327368-42327471)
chr2 (181-280)||(43374399-43374498)
chr2 (207-281)||(15038009-15038083)
chr2 (208-281)||(30466903-30466976)
chr2 (148-251)||(42602553-42602657)
chr2 (208-283)||(17324817-17324892)
chr2 (148-227)||(19322767-19322846)
chr2 (181-225)||(19605974-19606018)
chr2 (195-246)||(30943134-30943186)
chr2 (181-225)||(38341761-38341805)
[»] chr1 (22 HSPs)
chr1 (149-270)||(39964505-39964626)
chr1 (149-228)||(15581139-15581217)
chr1 (147-225)||(37046983-37047060)
chr1 (181-281)||(9500428-9500528)
chr1 (181-228)||(4825002-4825050)
chr1 (180-228)||(6127984-6128032)
chr1 (181-228)||(31605845-31605893)
chr1 (185-283)||(2755594-2755693)
chr1 (181-224)||(24217002-24217045)
chr1 (181-228)||(38939233-38939280)
chr1 (208-281)||(8077698-8077771)
chr1 (208-281)||(15059475-15059548)
chr1 (181-230)||(21273471-21273521)
chr1 (147-225)||(39012289-39012366)
chr1 (193-251)||(52029909-52029970)
chr1 (180-225)||(13857843-13857888)
chr1 (185-226)||(18928367-18928408)
chr1 (207-283)||(30677226-30677302)
chr1 (148-229)||(39714775-39714855)
chr1 (181-222)||(47360517-47360558)
chr1 (148-227)||(11063555-11063634)
chr1 (181-225)||(44417462-44417506)
[»] chr8 (23 HSPs)
chr8 (181-285)||(26168918-26169021)
chr8 (181-246)||(40136942-40137007)
chr8 (148-246)||(16852339-16852438)
chr8 (149-228)||(6530807-6530885)
chr8 (195-281)||(24339696-24339782)
chr8 (181-227)||(18128541-18128587)
chr8 (151-227)||(3624582-3624658)
chr8 (148-246)||(18897165-18897264)
chr8 (181-246)||(11979283-11979350)
chr8 (184-227)||(29855417-29855460)
chr8 (180-281)||(27746408-27746509)
chr8 (181-281)||(3734696-3734796)
chr8 (181-281)||(4718673-4718773)
chr8 (148-228)||(19703484-19703564)
chr8 (181-222)||(22779686-22779727)
chr8 (149-225)||(33727873-33727949)
chr8 (181-225)||(9126584-9126628)
chr8 (148-224)||(22268935-22269010)
chr8 (149-220)||(26688865-26688936)
chr8 (148-227)||(28566104-28566182)
chr8 (148-227)||(28573727-28573805)
chr8 (181-228)||(28787493-28787541)
chr8 (181-277)||(34639284-34639379)
[»] chr6 (10 HSPs)
chr6 (181-289)||(9208276-9208384)
chr6 (185-227)||(6691549-6691591)
chr6 (180-289)||(17149521-17149630)
chr6 (181-220)||(6384008-6384047)
chr6 (181-251)||(14557993-14558064)
chr6 (182-225)||(28741970-28742013)
chr6 (208-281)||(11448922-11448995)
chr6 (181-281)||(15360171-15360271)
chr6 (185-229)||(3433598-3433642)
chr6 (181-240)||(28028561-28028621)
[»] scaffold0189 (1 HSPs)
scaffold0189 (185-229)||(17720-17764)
[»] scaffold0221 (1 HSPs)
scaffold0221 (180-245)||(2888-2955)
[»] scaffold0576 (1 HSPs)
scaffold0576 (181-281)||(5155-5255)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 28929562 - 28929812
Alignment:
Q  40 ttggcggctattggctaaggtgggagagttaagaagtggagtgataagggtggtcttgagatcgactcccaactcaacaaatactaacaaattaacatat 139  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28929562 ttggcggctattggctaaggtgggacagttaagaagtggagtgataagggtggtcttgagatcgactcccacctcaacaaatactaacaaattaacatat 28929661  T
Q  140 taacgttaaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28929662 taacgttaaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattccccttatgccaatt 28929761  T
Q  240 tgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28929762 tgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccca 28929812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 602629 - 602542
Alignment:
Q  51 tggctaaggtgggagagttaagaagtggagtgataagggtggtcttgagatcgactcccaactc-aacaaatactaacaaattaacata 138  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||   || | ||||| ||| ||||||||||||| ||||||||||    
T  602629 tggctagggtgggagagttaaggagtggagtgataagggtggtcttggattcaattcccacctctaacaaatactaac-aattaacata 602542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 37980192 - 37980145
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37980192 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 37980145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 56409982 - 56410029
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  56409982 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 56410029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 29195093 - 29195186
Alignment:
Q  147 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaattt 240  Q
    |||||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||||||||    
T  29195093 aaaacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattt 29195186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 4088242 - 4088324
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta 231  Q
    |||||||||||||||| ||  || ||||| |||| |  |||||| || ||| ||||||||||||||||||||||||||||||||    
T  4088242 aaacccatttgggttggccgcgtggtgttggctt-gaaaccttggagggtggtcctttcaaggtctcaggttcgattctcctta 4088324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 38206201 - 38206127
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 224  Q
    |||||| |||||||||||| || ||| | |||| ||||||||| ||||||||||| ||||||||||||||| ||||    
T  38206201 aacccacttgggttgacctggtggtgctggctt-gggaccttggagtgtgctcctctcaaggtctcaggtttgatt 38206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 5609347 - 5609267
Alignment:
Q  209 ggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccc 289  Q
    ||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||    
T  5609347 ggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggccc 5609267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 13771656 - 13771555
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||||||| ||||| | |||||||||||  |||||||| | || ||| |||| | ||||| |||||| ||||| |||||||||| ||||||||    
T  13771656 ttgggatcttgaagtttgctcatctcaaggtctcaaattcgattccctctgatgtcaatctcggtgggctaagtccatacgaagctatgctctggcttta 13771557  T
Q  280 aa 281  Q
    ||    
T  13771556 aa 13771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 37492785 - 37492715
Alignment:
Q  156 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||| ||| |||||||| |  ||||||||||| |||||| |||| |||||||||||||||||| |||||    
T  37492785 ttgggttggcctggtagtgttgg--ttgggaccttggagtgtgatcctctcaaggtctcaggttcgactctcc 37492715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 40059025 - 40058925
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||| |  |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  40059025 ttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 40058927  T
Q  280 aa 281  Q
    ||    
T  40058926 aa 40058925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 21344848 - 21344895
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| ||||||||||| |||| |||||||    
T  21344848 ttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctcc 21344895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 25434703 - 25434656
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| |||||||| || ||||||||||||||| ||||||||    
T  25434703 ttgggaccttggagtgtgcttctctcaaggtctcaggtttgattctcc 25434656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 37109427 - 37109349
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 227  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  |||||||||||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 37109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 7093400 - 7093446
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    |||||| |||| ||||||||||||||||||| | |||||||||||||    
T  7093400 ttgggatcttggagtgtgctcctttcaaggttttaggttcgattctc 7093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 34844904 - 34844831
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  34844904 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 34844831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 42281278 - 42281240
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggtt 219  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  42281278 ttgggaccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 25852238 - 25852338
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  25852238 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 25852336  T
Q  280 aa 281  Q
    ||    
T  25852337 aa 25852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 31141388 - 31141347
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 222  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  31141388 ttgggaccttggagtgtgctcctctcaaggtctgaggttcga 31141347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 37455576 - 37455660
Alignment:
Q  156 ttgggttgacctagtagtgttagctttgggacctt-gaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaattt 240  Q
    |||||||| ||| || ||||| |||| |||||||| | ||| ||||||| ||||||||||||||||||||| |||  |||||||||    
T  37455576 ttgggttggcctggtggtgttggctt-gggacctttggagtatgctcctctcaaggtctcaggttcgattcccctggtgccaattt 37455660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 5998732 - 5998672
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcg-attctccttatgccaattt 240  Q
    ||||||||||| ||||||||||| |||||||||||  |||| || |||||| |||||||||    
T  5998732 ttgggaccttggagtgtgctcctctcaaggtctcacattcgaatcctccttgtgccaattt 5998672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 13873468 - 13873388
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcataca 260  Q
    |||||| |||| ||| ||||||||  ||||||||||||||||||| | ||  ||||||||| ||| | |||||||||||||    
T  13873468 ttgggatcttggagtttgctccttcaaaggtctcaggttcgattccctctggtgccaatttcggtaggctaagttcataca 13873388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 32475163 - 32475080
Alignment:
Q  156 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaattt 240  Q
    ||||||||  ||||| ||||| |||| |||||| || ||||  ||||| ||||||||||||||||||||||| || | |||||||    
T  32475163 ttgggttggtctagtggtgttggctt-gggaccctggagtgaactcctctcaaggtctcaggttcgattctctttgtaccaattt 32475080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 32990488 - 32990559
Alignment:
Q  210 gtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||| | ||| ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  32990488 gtctcaggttcgattccctttagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 32990559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 32992643 - 32992691
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  32992643 ttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctcc 32992691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 36837804 - 36837776
Alignment:
Q  58 ggtgggagagttaagaagtggagtgataa 86  Q
    |||||||||||||||||||||||||||||    
T  36837804 ggtgggagagttaagaagtggagtgataa 36837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 46295128 - 46295176
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||| ||| |||||||||||  ||||||||||||||||||||||||    
T  46295128 ttgggacattggagtgtgctcctcctcaaggtctcaggttcgattctcc 46295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 15485464 - 15485362
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaa 280  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||| |  ||||||| |||||  ||||| |||||||| ||||| | |||||||||    
T  15485464 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattcccctgacaccaatttcggtgggttaagtccatacaaaactatgttctggctttaa 15485365  T
Q  281 atg 283  Q
    |||    
T  15485364 atg 15485362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 16173052 - 16172980
Alignment:
Q  156 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    |||||||| ||| |||||||| |||| | ||||||| ||||||||||| |||||||||||||||||||||||||    
T  16173052 ttgggttggcctggtagtgttggctt-gagaccttggagtgtgctcctctcaaggtctcaggttcgattctcct 16172980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 33025504 - 33025606
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||||||||||| ||||| |||||  || ||||| |||| ||||| |||| | |||  ||||| |||||||||||||||| ||||||||    
T  33025504 ttgggatcttggagtgtgctcctctcaagatctcaactttgattccccttgatgccgatttcgatggattaagtccatacaaagctatgctctggcttta 33025603  T
Q  280 aat 282  Q
    |||    
T  33025604 aat 33025606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 16247174 - 16247135
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttc 220  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  16247174 ttgggaccttgcagtgtgctcctatcaaggtctcaggttc 16247135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 19145584 - 19145482
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||| |||||||||| |||||||||| | ||  ||||||||| ||||| | |||| |||||| |||| |||| ||||||||    
T  19145584 ttgggatcttggagtatgctcctctcaaggtctccggttcgattccctctggtgccaatttcggtgggc-aagtccatacagagctttgctctggcttta 19145486  T
Q  280 aatg 283  Q
    ||||    
T  19145485 aatg 19145482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 31669069 - 31669022
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  31669069 ttgggaccttggagtctgctcctctcaaggtcttaggttcgattctcc 31669022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 14656710 - 14656645
Alignment:
Q  158 gggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 224  Q
    |||||||||| || ||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||    
T  14656710 gggttgacctggttgtgttggctt-gagaccttggagtttgctcctctcaaggtctcaggttcgatt 14656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 22253266 - 22253209
Alignment:
Q  232 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccc 289  Q
    ||||||||| | ||| |||||| |||||||||||||| | ||| ||||||||||||||    
T  22253266 tgccaatttcgatgggctaagtccatacaaagctatgttctggatttaaatgaggccc 22253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 32059613 - 32059513
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   |||||||||||||||||| || ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  32059613 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 32059515  T
Q  280 aa 281  Q
    ||    
T  32059514 aa 32059513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 32340381 - 32340340
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 222  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  32340381 ttgggaccttggagtgtgctcctctcaaggtcttaggttcga 32340340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 36895449 - 36895545
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctt 277  Q
    |||||| |||| ||||||||||| ||||||| ||| ||||||||| | ||  | ||||||| ||||||| |||| ||||||||||| |||| ||||||    
T  36895449 ttgggatcttggagtgtgctcctctcaaggtttcatgttcgattccctctggtaccaatttcggtggtc-aagtccatacaaagctttgctctggctt 36895545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 8780509 - 8780545
Alignment:
Q  188 cttgaagtgtgctcctttcaaggtctcaggttcgatt 224  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  8780509 cttggagtgtgctcctctcaaggtctcaggttcgatt 8780545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 16773838 - 16773910
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaa 251  Q
    ||||||||| | |||||||||||  || |||||||||||||||||||| || |||||||||| ||||| ||||    
T  16773838 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaa 16773910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 27887464 - 27887557
Alignment:
Q  193 agtgtgctcctttcaaggtctcaggttcgattc-tccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgag 285  Q
    |||||||| || |||| |||| ||||||||||| |||||||| |||||| ||||| |||||| |||||  |||||||||||| |||||||||||    
T  27887464 agtgtgcttctctcaatgtcttaggttcgattcctccttatgtcaattttggtgggctaagtccatacgcagctatgctttgcctttaaatgag 27887557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 31714348 - 31714394
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  31714348 ttgggaccttgaagtgtgctcctctcaaggtctcaagttcgattctc 31714394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 42799821 - 42799744
Alignment:
Q  151 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    |||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  42799821 cccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtctcaggttcgactctcct 42799744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 18316543 - 18316494
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt 230  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  18316543 ttgggaccttggagtgtgctcctctcaaggtcttaggttcgattctcctt 18316494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 7470362 - 7470288
Alignment:
Q  207 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    ||||||||||||||||||| | || |||||||||| ||||| ||||||||||||| |||| |||| ||||||||||    
T  7470362 aaggtctcaggttcgattccctctaatgccaatttcggtgggctaagttcatacagagct-tgctctggctttaaa 7470288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 11092245 - 11092167
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||| |||||||| |||||| ||||| |||| ||||||||| |||||||| || |||||||||||  |||||||||||    
T  11092245 aacccacttgggttggcctagtggtgttggctt-gggaccttgtagtgtgctactctcaaggtctcaacttcgattctcc 11092167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 34844370 - 34844504
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt--ctccttatgccaatttgggtg 245  Q
    ||||||| |||||||| ||| ||  |||| |||| | ||||||| ||||||||||| ||||||||||||||||||||  ||||  | |||||||| ||||    
T  34844370 aaacccacttgggttgccctggtgttgttggctt-gagaccttggagtgtgctcctctcaaggtctcaggttcgattccctccaga-gccaatttcggtg 34844467  T
Q  246 gtctaagttcatacaaagctatgctttggctttaaatg 283  Q
    | || ||| |||||| |||| |||| ||||||||||||    
T  34844468 gact-agtacatacagagctttgctatggctttaaatg 34844504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 40268487 - 40268567
Alignment:
Q  147 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||| |||||||  ||| || ||||| |||| ||||||||| |||| |||||| | ||||||||||||||||||||||    
T  40268487 aaaacccacttgggtttgcctggtggtgttggctt-gggaccttggagtgggctcctcttaaggtctcaggttcgattctcc 40268567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 35623311 - 35623267
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  35623311 ttgggaccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 53288859 - 53288785
Alignment:
Q  207 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    ||||||||||| ||||||| | ||  ||||||||| ||||| |||||| ||||||||||| |||||||||||||||    
T  53288859 aaggtctcaggctcgattccctctggtgccaatttcggtggactaagtccatacaaagct-tgctttggctttaaa 53288785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 7485698 - 7485620
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcata 258  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | || |||||||||| ||||| |||||||||||    
T  7485698 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctgatgccaatttcggtgggctaagttcata 7485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 19716199 - 19716276
Alignment:
Q  151 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||||||||||| | || ||||| |||| |||||| || |||||||||||  |||||||||| |||||||||||||    
T  19716199 cccatttgggttgacatggtggtgttggctt-gggaccatggagtgtgctcctcctcaaggtctctggttcgattctcc 19716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 39604732 - 39604682
Alignment:
Q  232 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaat 282  Q
    ||||||||| ||||| |||||| |||| ||| |||||||||||||||||||    
T  39604732 tgccaattttggtggactaagtccatataaatctatgctttggctttaaat 39604682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 53863912 - 53863866
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  53863912 ttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctc 53863866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 30257648 - 30257756
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| | ||| |||||| |||||| |||| |||| ||||||||    
T  30257648 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcgatggactaagtccatacagagct-tgctctggcttta 30257746  T
Q  280 aatgaggccc 289  Q
    |||| |||||    
T  30257747 aatggggccc 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 40777045 - 40777090
Alignment:
Q  182 tgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    |||||| ||| ||||||||||| ||||||||||||||| |||||||    
T  40777045 tgggacattggagtgtgctcctctcaaggtctcaggtttgattctc 40777090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 54990733 - 54990782
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcct 229  Q
    ||||||||||| || ||||||||  |||||||||||||||||||||||||    
T  54990733 ttgggaccttggagcgtgctcctcctcaaggtctcaggttcgattctcct 54990782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 7207641 - 7207689
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    |||||||||||||| ||| |||| | ||||| |||||||||||||||||    
T  7207641 ttgggaccttgaagggtgatcctcttaaggtttcaggttcgattctcct 7207689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 15034352 - 15034423
Alignment:
Q  156 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||| ||| || ||||| || ||||||||||| || ||| |||| |||||||||||||||| |||||||    
T  15034352 ttgggttggcctggtggtgtt-gccttgggaccttggagggtgatcctctcaaggtctcaggttcaattctcc 15034423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 16900726 - 16900678
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  16900726 ttgggaccttggagtgtgctcctcgtcaaggtctcatgttcgattctcc 16900678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 43303757 - 43303836
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||||||||||| ||| || ||| | |||| | ||||||| || |||||||| || |||||||||||| ||||||||    
T  43303757 aaacccatttgggttggcctggtggtgatggctt-gagaccttggagcgtgctcctctccaggtctcaggtttgattctcc 43303836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 50162067 - 50162111
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||| ||||||||| |||||| |||||||||||| ||||||||    
T  50162067 ttgggatcttgaagtgcgctcctctcaaggtctcagattcgattc 50162111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 25956368 - 25956290
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||||||| |||||| || || |||| ||||||||| ||||||||||| ||||||||| |||||| |||||||    
T  25956368 aacccatttgggttggcctagtggtattggctt-gggaccttggagtgtgctcctctcaaggtcttaggttcaattctcc 25956290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 43215182 - 43215277
Alignment:
Q  147 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttg 241  Q
    |||||||| ||||||||  ||||| || || |||| ||||||| | |||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  43215182 aaaacccacttgggttggtctagtggtattggctt-gggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctcttatgccaatttg 43215277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 1469164 - 1469248
Alignment:
Q  205 tcaaggtctcaggttcgattctcctt--atgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccc 289  Q
    |||||||||||||||||||| |||||  |||||||||| | ||| | |||| ||||||||||| | |||||||||||||||||||||    
T  1469164 tcaaggtctcaggttcgatt-tcctttaatgccaatttcgatgggc-aagtccatacaaagctttactttggctttaaatgaggccc 1469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 33869521 - 33869443
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 227  Q
    |||||| |||||||| ||||||||| || |||| | ||||| |||||||||||||| |||||||||| ||||||||||||    
T  33869521 aacccacttgggttggcctagtagtattggctt-gagacctggaagtgtgctccttctcaaggtctctggttcgattctc 33869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 36772448 - 36772376
Alignment:
Q  208 aggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||| ||||  || ||||||||||| ||||| ||||||||||||| |||| |||| ||||||||||    
T  36772448 aggtctcaggtttgatttcccctatgccaatttcggtgggctaagttcatacagagct-tgctctggctttaaa 36772376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 5579310 - 5579231
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 228  Q
    |||||| |||||||||||| || ||||| |||| ||||||||| |||||||||||  ||||||||||||||| || |||||    
T  5579310 aacccacttgggttgacctggtggtgttggctt-gggaccttggagtgtgctcctcctcaaggtctcaggtttgactctcc 5579231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 25132420 - 25132352
Alignment:
Q  184 ggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctccttatgccaatttgggtggtctaa 251  Q
    |||||| | |||||||||||| | ||||||||||||||||||||||  |||| ||||||||||| ||||    
T  25132420 ggacctaggagtgtgctccttcttaaggtctcaggttcgattctcccaatgctaatttgggtgggctaa 25132352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 26459486 - 26459408
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 227  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  |||||||||||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 2751299 - 2751399
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  2751299 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 2751397  T
Q  280 aa 281  Q
    ||    
T  2751398 aa 2751399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 22696347 - 22696392
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||| |||| ||||||||||| ||||||||||||||| |||||    
T  22696347 tttgggatcttggagtgtgctcctctcaaggtctcaggtttgattc 22696392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 22760894 - 22760942
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||||| | |||||||||||  ||||||||||||||||||||||||    
T  22760894 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 22760942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 28646997 - 28647041
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||| |||| |||||||| || |||||||||||||||||||||    
T  28646997 ttgggatcttggagtgtgcttctctcaaggtctcaggttcgattc 28647041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 46279048 - 46279092
Alignment:
Q  184 ggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||| ||||||||||| |||||||||| |||| ||||||||    
T  46279048 ggaccttggagtgtgctcctctcaaggtctccggtttgattctcc 46279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 6099563 - 6099516
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6099563 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 6099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 43964065 - 43963989
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||| ||||||||  ||||||||||| | |||||||||||| ||||||||||| ||||||||||| ||| |||||    
T  43964065 aaacccacttgggttggtctagtagtgttgg-tttgggaccttggagtgtgctcctctcaaggtctcatgtttgattc 43963989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 26482124 - 26482172
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  26482124 ttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctcct 26482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 26176370 - 26176268
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattct-ccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||||||||  |||||||||| |||||||||||| ||||||||| |||  ||||||||| ||||| || ||| |||||| | || |||||||| ||||    
T  26176370 ttgggaccttggggtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggcct-agtccatacagacctttgctttggattta 26176272  T
Q  280 aatg 283  Q
    ||||    
T  26176271 aatg 26176268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 29503270 - 29503350
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||| |||||||| |||||| || || | |||||||||| | |||||||||||  ||||||||||||||||||||||||    
T  29503270 aaacccacttgggttggcctagtggtattgg-tttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 29503350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 32526259 - 32526214
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||    
T  32526259 tttgggatcttgaagtttgctcctctcaaggtctcaggttcgattc 32526214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 3697444 - 3697396
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    ||||||||||| || |||||||| |||||||||| ||||||||||||||    
T  3697444 ttgggaccttggagagtgctcctctcaaggtctctggttcgattctcct 3697396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 8192524 - 8192480
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||    
T  8192524 ttgggatcttggagtgtgctcctctcaaggtctcaggttcgattc 8192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 42327471 - 42327368
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcct-tatgccaatttgggtgg 246  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  ||||||||||||||||||||||| |   |||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgg 42327373  T
Q  247 tctaa 251  Q
     ||||    
T  42327372 gctaa 42327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 43374498 - 43374399
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||| | ||  ||||||||| ||||| ||||||| |||||||||| |||| ||||||||    
T  43374498 ttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtttatacaaagct-tgctctggcttta 43374400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 15038009 - 15038083
Alignment:
Q  207 aaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||||||||||||||    
T  15038009 aaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctttggctttaaa 15038083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 30466976 - 30466903
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  30466976 aggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 30466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 42602553 - 42602657
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttgggtg 245  Q
    ||||||| |||||||| |||||| || || |||| ||||||| | |||||||||||| ||||||||| ||||| ||||||| |   ||||||||||||||    
T  42602553 aaacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtg 42602651  T
Q  246 gtctaa 251  Q
    | ||||    
T  42602652 ggctaa 42602657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 17324817 - 17324892
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatg 283  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||||    
T  17324817 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatg 17324892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 19322767 - 19322846
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 227  Q
    ||||||| ||||||||| ||||| || || | |||||||||| | ||||||||||| ||||||||||| |||| |||||||    
T  19322767 aaacccacttgggttgatctagtggtattgg-tttgggacctgggagtgtgctcctcttcaaggtctctggtttgattctc 19322846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19606018 - 19605974
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||| |||| |||| |||||| |||||||||||||||||||||    
T  19606018 ttgggatcttggagtgcgctcctctcaaggtctcaggttcgattc 19605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 30943134 - 30943186
Alignment:
Q  195 tgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtgg 246  Q
    ||||||||| ||||||||||| ||| ||||||| ||||||||||||| |||||    
T  30943134 tgtgctcctctcaaggtctcaagtttgattctctcttatgccaatttcggtgg 30943186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 38341761 - 38341805
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||    
T  38341761 ttgggatcttgaagtttgctcctctcaaggtctcagattcgattc 38341805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 39964505 - 39964626
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggt 247  Q
    |||| |||||||||| |||||  ||||| |||| | ||||||| ||||||||||| ||||||||||||||| ||||| | ||  ||||||||| |||||     
T  39964505 aaccaatttgggttggcctagaggtgttggctt-gcgaccttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggtggg 39964603  T
Q  248 ctaagttcatacaaagctatgct 270  Q
    || |||||| ||| |||||||||    
T  39964604 ctgagttcacacagagctatgct 39964626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 15581217 - 15581139
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| | |||||||||||||| |||||||    
T  15581217 aacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctaaaggtctcaggttcaattctcc 15581139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 37046983 - 37047060
Alignment:
Q  147 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||||| ||||||||  || || ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||||    
T  37046983 aaaacccacttgggttggtctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtctcaggtttgattc 37047060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 9500528 - 9500428
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  9500528 ttgggatcttggagtttgctccttcagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 9500430  T
Q  280 aa 281  Q
    ||    
T  9500429 aa 9500428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 4825002 - 4825050
Alignment:
Q  181 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  4825002 ttgggaccttggagtgtgctcctcttcaaggtctcaggtttgattctcc 4825050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 6128032 - 6127984
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||||||||| || |||||||| ||||||||||| ||||||||||||    
T  6128032 tttgggaccttggagcgtgctcctctcaaggtctcaagttcgattctcc 6127984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 31605893 - 31605845
Alignment:
Q  181 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 228  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  31605893 ttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctcc 31605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 2755594 - 2755693
Alignment:
Q  185 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatg 283  Q
    ||||||||||| ||||| | ||||||||| ||||| |||| || ||  | ||||||  |||||  |||||||||||||||||||| | ||||||||||||    
T  2755594 gaccttgaagtatgctcatctcaaggtcttaggtttgattatctctgttaccaattgtggtgggttaagttcatacaaagctatgttatggctttaaatg 2755693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 24217002 - 24217045
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 224  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||    
T  24217002 ttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 24217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 38939233 - 38939280
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    ||||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  38939233 ttgggaccttggagtgtgctcctctcaaggtctctggtttgattctcc 38939280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 8077698 - 8077771
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  8077698 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 8077771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 15059548 - 15059475
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  15059548 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 15059475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 21273471 - 21273521
Alignment:
Q  181 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcctt 230  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  21273471 ttgggaccttgaagtgtggtcctcttcaaggtctcggattcgattctcctt 21273521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 39012289 - 39012366
Alignment:
Q  147 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||||| || ||||| |||||| ||||| |||| ||||||||| ||||||||| | ||||||||| ||||| |||||    
T  39012289 aaaacccactttggttggcctagtggtgttggctt-gggaccttggagtgtgctcttctcaaggtcttaggtttgattc 39012366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 52029970 - 52029909
Alignment:
Q  193 agtgtgctcctt-tcaaggtctcaggttcgattct--ccttatgccaatttgggtggtctaa 251  Q
    |||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||| ||||    
T  52029970 agtgtgctccttctcaaggtctcaggttcgattctcccccgatgccaatttgggtgggctaa 52029909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 13857888 - 13857843
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    |||||||||||| || |||||||| |||||||||||||||| ||||    
T  13857888 tttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 13857843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 18928367 - 18928408
Alignment:
Q  185 gaccttgaagtgtgctcctttcaaggtctcaggttcgattct 226  Q
    |||||| |||||||||||| |||||||||||||||| |||||    
T  18928367 gaccttaaagtgtgctcctctcaaggtctcaggttcaattct 18928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 30677226 - 30677302
Alignment:
Q  207 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatg 283  Q
    ||||||||||||| ||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||||||||||||||||    
T  30677226 aaggtctcaggtttgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctttggctttaaatg 30677302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 39714855 - 39714775
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    ||||||| |||||||| | |||| | ||| |||| |||| |||| ||||||||||| ||||||||||| ||| |||||||||    
T  39714855 aaacccacttgggttggcatagtggcgttggctt-gggatcttggagtgtgctcctctcaaggtctcaagtttgattctcct 39714775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 47360558 - 47360517
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 222  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  47360558 ttgggaccttggagtgtgctcctctcaagatctcaggttcga 47360517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 11063555 - 11063634
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 227  Q
    ||||||||||||||||| ||||| || || || |||||||||  ||||||| ||||  ||||||||| |||||||||||||    
T  11063555 aaacccatttgggttgatctagtggtattggc-ttgggacctgaaagtgtgttcctcctcaaggtcttaggttcgattctc 11063634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 44417506 - 44417462
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||||||| |||||||| || ||||||||||||||| |||||    
T  44417506 ttgggaccttggagtgtgctgctctcaaggtctcaggtttgattc 44417462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 26169021 - 26168918
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||| ||||||||||||||| |||| ||||| |||||||||| ||||| | ||||||||||| |||| || | ||||||||    
T  26169021 ttgggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggc-aagttcatacagagct-tgttctggcttta 26168924  T
Q  280 aatgag 285  Q
    ||||||    
T  26168923 aatgag 26168918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 40137007 - 40136942
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtgg 246  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||   ||||||||| |||||    
T  40137007 ttgggaccttggagtgtgctcctctcaaggtctcaggtttgattctcccggtgccaatttcggtgg 40136942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 16852339 - 16852438
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcctta-tgccaatttgggtg 245  Q
    ||||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  || |||||||||||||||||||||||| ||||||||| ||||    
T  16852339 aaacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtg 16852437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 6530807 - 6530885
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 228  Q
    |||||| |||||||| ||| || ||||| |||| ||||||| | ||||||||||| |||| |||||||||||||||||||    
T  6530807 aacccacttgggttggcctggtggtgttggctt-gggacctaggagtgtgctcctctcaatgtctcaggttcgattctcc 6530885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 24339782 - 24339696
Alignment:
Q  195 tgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||| || ||||||||| |||||||||| || ||| | ||||||| |||||  ||||||||||||||||| |||||||||||||||    
T  24339782 tgtgcttctctcaaggtcttaggttcgattttctcttgtaccaatttcggtgga-taagttcatacaaagctttgctttggctttaaa 24339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 18128541 - 18128587
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||    
T  18128541 ttgggatcttgaagtgtgctcctttcaaggtcttagattcgattctc 18128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 3624582 - 3624658
Alignment:
Q  151 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 227  Q
    |||| |||||||| |||||| || || |||| ||||||| | ||||||||||| ||||||||||||||||||||||||    
T  3624582 cccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 18897165 - 18897264
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattc-tccttatgccaatttgggtg 245  Q
    ||||||| |||||||| |||||| ||||| | |||||||||||  |||||||||||  ||||||||||| ||||||||| ||||  ||||||||| ||||    
T  18897165 aaacccacttgggttggcctagtggtgttgg-tttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattcttcctggtgccaatttaggtg 18897263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 11979283 - 11979350
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattct-ccttatgccaatttgggtgg 246  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| |||| ||| |||||||||| |||||    
T  11979283 ttgggaccttgaagtgtgcttcttctcaaggtcttaggttcggttctgcctgatgccaatttaggtgg 11979350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 29855460 - 29855417
Alignment:
Q  184 ggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    |||||||| ||||||||||| | |||||||||||||||||||||    
T  29855460 ggaccttgtagtgtgctcctcttaaggtctcaggttcgattctc 29855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 27746509 - 27746408
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggcttt 278  Q
    ||||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||    
T  27746509 tttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttt 27746411  T
Q  279 aaa 281  Q
    |||    
T  27746410 aaa 27746408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 3734796 - 3734696
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  3734796 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 3734698  T
Q  280 aa 281  Q
    ||    
T  3734697 aa 3734696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 4718673 - 4718773
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  4718673 ttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 4718771  T
Q  280 aa 281  Q
    ||    
T  4718772 aa 4718773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 19703564 - 19703484
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    ||||||| |||||||| |||||| || || |||| |||||||   |||||||||||  ||||||||||||||||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggctt-gggacctgagagtgtgctcctcctcaaggtctcaggttcgattctcc 19703484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 22779686 - 22779727
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 222  Q
    ||||||||||| | ||||||||| ||||||||||||||||||    
T  22779686 ttgggaccttggaatgtgctcctctcaaggtctcaggttcga 22779727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 33727949 - 33727873
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattc 225  Q
    ||||||||||||||| |||||| || | || |||| ||| | |||||||||||||  |||||||||||||||||||||    
T  33727949 aacccatttgggttgccctagtggtat-aggtttgagacttggaagtgtgctcctcctcaaggtctcaggttcgattc 33727873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 9126628 - 9126584
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||||||||| ||||||||||| |||||| |||| |||||||||    
T  9126628 ttgggaccttggagtgtgctcctctcaaggactcaagttcgattc 9126584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 22269010 - 22268935
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 224  Q
    ||||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||| | ||||||||||| ||| ||||    
T  22269010 aaacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcttctcaaggtctcaagtttgatt 22268935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 26688865 - 26688936
Alignment:
Q  149 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttc 220  Q
    |||||| |||||||| ||| || ||||| |||| ||||||||| |||||||||||  ||||||||||||||||    
T  26688865 aacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 28566104 - 28566182
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 227  Q
    ||||||| ||||||||||||||| || || | |||||||||||  |||||||||||| |||||| |||| |||||||||||    
T  28566104 aaacccacttgggttgacctagtggtatt-ggtttgggaccttagagtgtgctccttctcaagg-ctcatgttcgattctc 28566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 28573727 - 28573805
Alignment:
Q  148 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 227  Q
    ||||||| ||||||||||||||| || || | |||||||||||  |||||||||||| |||||| |||| |||||||||||    
T  28573727 aaacccacttgggttgacctagtggtatt-ggtttgggaccttagagtgtgctccttctcaagg-ctcatgttcgattctc 28573805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 28787541 - 28787493
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 228  Q
    |||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  28787541 ttgggaccttcaagtgtgctcctcctcaaggtctcaggtttgattctcc 28787493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 34639379 - 34639284
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctt 277  Q
    |||||| |||| ||||||||||| ||||||||||||| ||||| |  ||  ||||||||| |||||  ||||| |||||| |||| |||| ||||||    
T  34639379 ttgggatcttggagtgtgctcctctcaaggtctcaggctcgatccctctggtgccaatttcggtgg-gtaagtccatacagagctttgctctggctt 34639284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 9208276 - 9208384
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| ||||||| |||||||||||||||||||| | |||  ||||||||| ||||| | |||| |||||| |||  |||||||||||||    
T  9208276 ttgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggc-aagtccatacagagccttgctttggcttta 9208374  T
Q  280 aatgaggccc 289  Q
    |||| |||||    
T  9208375 aatggggccc 9208384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 6691591 - 6691549
Alignment:
Q  185 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 227  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  6691591 gaccttggagtgtgctcctctcaaggtctcaggttcgattctc 6691549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 17149630 - 17149521
Alignment:
Q  180 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttt 278  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||| | ||  ||| ||||| ||| | | |||| |||||| |||  ||||||||||||    
T  17149630 tttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgctaatttcggttggc-aagtccatacagagccttgctttggcttt 17149532  T
Q  279 aaatgaggccc 289  Q
    ||||| |||||    
T  17149531 aaatggggccc 17149521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 6384047 - 6384008
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttc 220  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  6384047 ttgggaccttggagtgtgctcctctcaaggtctcaggttc 6384008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14557993 - 14558064
Alignment:
Q  181 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctccttatgccaatttgggtggtctaa 251  Q
    ||||||||| |||||||||||||  ||  ||||||||||||||||||||   || |||||||||||||||||    
T  14557993 ttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctcccggtgtcaatttgggtggtctaa 14558064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 28742013 - 28741970
Alignment:
Q  182 tgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 225  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||    
T  28742013 tgggatcttggagtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 11448922 - 11448995
Alignment:
Q  208 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 281  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  11448922 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 11448995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 15360271 - 15360171
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  15360271 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 15360173  T
Q  280 aa 281  Q
    ||    
T  15360172 aa 15360171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 3433642 - 3433598
Alignment:
Q  185 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||    
T  3433642 gaccttggagtttgctcctctcaaggtctcaggttcgattttcct 3433598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 28028561 - 28028621
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattct-ccttatgccaattt 240  Q
    ||||||||||  |||| |||||| ||||||||||| |||||||||| ||| ||||||||||    
T  28028561 ttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaattt 28028621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 17764 - 17720
Alignment:
Q  185 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 229  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||    
T  17764 gaccttggagtgttctcctctcaaggtctcaggttcgattctcct 17720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 2955 - 2888
Alignment:
Q  180 tttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc-ttatgccaatttgggtg 245  Q
    ||||||||||||||||||| ||||  | ||||||||| ||||||||||||  ||||||||||||||||    
T  2955 tttgggaccttgaagtgtgatcctccttaaggtctcaagttcgattctccactatgccaatttgggtg 2888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 5255 - 5155
Alignment:
Q  181 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 279  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  5255 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 5157  T
Q  280 aa 281  Q
    ||    
T  5156 aa 5155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University