View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_72 (Length: 259)
Name: NF18406_high_72
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_72 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 5679692 - 5679461
Alignment:
| Q |
10 |
attattctgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatagatgct |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5679692 |
attattatgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatggatgct |
5679593 |
T |
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| Q |
110 |
aggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctatgttgag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5679592 |
aggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctatgttgag |
5679494 |
T |
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| Q |
210 |
ttgtgctatataagatgttgaaatagtggtagg |
242 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5679493 |
ttgtgctatataagatgttgaaatagtggtagg |
5679461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 5704744 - 5704513
Alignment:
| Q |
10 |
attattctgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatagatgct |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5704744 |
attattatgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatggatgct |
5704645 |
T |
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| Q |
110 |
aggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctatgttgag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5704644 |
aggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctatgttgag |
5704546 |
T |
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| Q |
210 |
ttgtgctatataagatgttgaaatagtggtagg |
242 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5704545 |
ttgtgctatataagatgttgaaatagtggtagg |
5704513 |
T |
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Back To:
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