View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_79 (Length: 247)
Name: NF18406_high_79
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 38244290 - 38244445
Alignment:
| Q |
18 |
tcattcatcatttagttcggattcatcatcatcagctgggatcaataattttggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagct |
117 |
Q |
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| T |
38244290 |
tcattcatcatttaattcggattcatcatcatcagctgggatcaataattttggtagtcatgctccgggaatcaaaaaagcgatgcagattcttgaagct |
38244389 |
T |
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| Q |
118 |
cagtttgggcatctgcaaacatcaacatcatcaattaatattaatgatgacatcat |
173 |
Q |
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| T |
38244390 |
cagtttggacatctgcaaacatcaacatcatcaattaatattaatgatgacatcat |
38244445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 38260583 - 38260714
Alignment:
| Q |
19 |
cattcatcatttagttcggattcatcatcatcagctgggatcaataattttggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagctc |
118 |
Q |
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| T |
38260583 |
cattcatcatttgattatgattcatcatcatcagttggtaccaataattttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactc |
38260682 |
T |
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| Q |
119 |
agtttgggcatctgcaaacatcaacatcatca |
150 |
Q |
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| T |
38260683 |
agtttgggcatttgcatacatcaacgtcatca |
38260714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 38244485 - 38244519
Alignment:
| Q |
213 |
gatgatgaaaatgaatacttctactacttcttctc |
247 |
Q |
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| T |
38244485 |
gatgatgaaaatgaatacttctactacttcttctc |
38244519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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