View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_8 (Length: 581)

Name: NF18406_high_8
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_8
NF18406_high_8
[»] scaffold0034 (1 HSPs)
scaffold0034 (22-566)||(103956-104500)
[»] chr4 (26 HSPs)
chr4 (22-569)||(47420284-47420831)
chr4 (26-569)||(1826658-1827201)
chr4 (399-566)||(23641081-23641248)
chr4 (399-566)||(23646739-23646906)
chr4 (82-569)||(11585359-11585846)
chr4 (229-569)||(19732308-19732648)
chr4 (310-557)||(3128396-3128643)
chr4 (223-477)||(5789251-5789505)
chr4 (118-560)||(54685895-54686337)
chr4 (392-557)||(7661790-7661956)
chr4 (370-452)||(17437992-17438074)
chr4 (406-557)||(20397057-20397208)
chr4 (511-561)||(23156733-23156783)
chr4 (310-482)||(23280370-23280542)
chr4 (400-557)||(10561816-10561973)
chr4 (310-359)||(19649385-19649434)
chr4 (413-482)||(25136684-25136753)
chr4 (452-569)||(42952075-42952192)
chr4 (424-572)||(19308102-19308250)
chr4 (307-354)||(10561723-10561770)
chr4 (438-489)||(21139973-21140024)
chr4 (104-198)||(29327016-29327110)
chr4 (316-374)||(32809122-32809180)
chr4 (104-145)||(19649599-19649640)
chr4 (509-545)||(17536678-17536714)
chr4 (512-560)||(19649184-19649232)
[»] chr7 (23 HSPs)
chr7 (22-566)||(4936241-4936785)
chr7 (26-569)||(29969454-29969997)
chr7 (80-569)||(17722115-17722604)
chr7 (387-557)||(34233193-34233363)
chr7 (79-137)||(20696167-20696225)
chr7 (79-137)||(20701645-20701703)
chr7 (511-569)||(47550405-47550463)
chr7 (511-569)||(47554870-47554928)
chr7 (413-482)||(20703978-20704047)
chr7 (413-482)||(20872022-20872091)
chr7 (104-145)||(33795271-33795312)
chr7 (310-359)||(45994266-45994315)
chr7 (413-545)||(13441562-13441694)
chr7 (310-557)||(4078765-4079012)
chr7 (370-485)||(43573105-43573220)
chr7 (446-569)||(45460792-45460915)
chr7 (511-561)||(12123175-12123225)
chr7 (511-569)||(22864330-22864388)
chr7 (413-470)||(22864232-22864289)
chr7 (413-470)||(47550504-47550561)
chr7 (413-470)||(47554969-47555026)
chr7 (512-560)||(45994065-45994113)
chr7 (104-144)||(45994481-45994521)
[»] chr3 (15 HSPs)
chr3 (22-569)||(2365758-2366305)
chr3 (37-568)||(19918360-19918891)
chr3 (104-569)||(16185791-16186256)
chr3 (229-569)||(961483-961823)
chr3 (103-566)||(12333282-12333745)
chr3 (322-482)||(30165736-30165896)
chr3 (388-569)||(21738973-21739154)
chr3 (223-553)||(8131469-8131799)
chr3 (370-535)||(17076763-17076928)
chr3 (511-557)||(17152393-17152439)
chr3 (511-566)||(16665563-16665618)
chr3 (511-557)||(9827299-9827345)
chr3 (310-359)||(10621022-10621071)
chr3 (413-482)||(11757513-11757582)
chr3 (512-545)||(23921849-23921882)
[»] chr8 (15 HSPs)
chr8 (22-566)||(7925869-7926412)
chr8 (22-569)||(41663481-41664028)
chr8 (26-569)||(20492258-20492801)
chr8 (26-569)||(8301283-8301826)
chr8 (80-561)||(13877655-13878139)
chr8 (103-566)||(20825783-20826246)
chr8 (406-557)||(17660333-17660484)
chr8 (388-486)||(43247014-43247112)
chr8 (413-557)||(36158645-36158789)
chr8 (511-569)||(10800263-10800321)
chr8 (399-557)||(16374593-16374751)
chr8 (310-359)||(4986466-4986515)
chr8 (106-137)||(12333760-12333791)
chr8 (104-145)||(4986260-4986301)
chr8 (413-470)||(10800165-10800222)
[»] chr1 (14 HSPs)
chr1 (27-566)||(6052086-6052625)
chr1 (322-569)||(35542514-35542761)
chr1 (206-569)||(47621372-47621735)
chr1 (308-569)||(39431766-39432027)
chr1 (235-347)||(22190108-22190220)
chr1 (512-569)||(20797140-20797197)
chr1 (520-572)||(3543711-3543763)
chr1 (223-362)||(25527995-25528134)
chr1 (435-569)||(48711575-48711709)
chr1 (205-470)||(5498593-5498858)
chr1 (520-557)||(23294989-23295026)
chr1 (310-359)||(25503394-25503443)
chr1 (415-456)||(48435743-48435784)
chr1 (310-342)||(21411959-21411991)
[»] chr5 (21 HSPs)
chr5 (26-569)||(23239861-23240404)
chr5 (216-566)||(42515203-42515553)
chr5 (22-355)||(30728455-30728788)
chr5 (353-569)||(30730758-30730974)
chr5 (103-566)||(25855633-25856096)
chr5 (229-569)||(33171138-33171478)
chr5 (308-569)||(27164494-27164755)
chr5 (103-509)||(33384400-33384806)
chr5 (406-557)||(6999500-6999651)
chr5 (310-557)||(10485355-10485601)
chr5 (310-476)||(1822422-1822588)
chr5 (223-557)||(36257267-36257601)
chr5 (512-560)||(25591782-25591830)
chr5 (438-557)||(6050732-6050851)
chr5 (413-548)||(30508527-30508662)
chr5 (413-548)||(30548870-30549005)
chr5 (511-569)||(29326779-29326837)
chr5 (517-569)||(19509615-19509667)
chr5 (388-455)||(17830266-17830333)
chr5 (403-488)||(21823105-21823190)
chr5 (413-470)||(29326878-29326935)
[»] chr2 (6 HSPs)
chr2 (100-566)||(33514383-33514850)
chr2 (388-569)||(11230115-11230296)
chr2 (439-485)||(37327222-37327268)
chr2 (235-368)||(4221265-4221398)
chr2 (388-569)||(9667485-9667666)
chr2 (512-557)||(22724103-22724148)
[»] scaffold1350 (1 HSPs)
scaffold1350 (206-566)||(1029-1389)
[»] chr6 (22 HSPs)
chr6 (110-566)||(17604535-17604991)
chr6 (441-569)||(2555084-2555212)
chr6 (385-566)||(17576193-17576374)
chr6 (308-569)||(13939198-13939458)
chr6 (370-569)||(18681037-18681236)
chr6 (223-563)||(15955299-15955637)
chr6 (406-557)||(11059359-11059510)
chr6 (224-273)||(22575585-22575634)
chr6 (434-557)||(25351715-25351838)
chr6 (511-561)||(18293978-18294028)
chr6 (434-488)||(26511776-26511830)
chr6 (434-488)||(26516892-26516946)
chr6 (421-486)||(17712108-17712173)
chr6 (415-542)||(17077573-17077700)
chr6 (419-482)||(17255926-17255989)
chr6 (118-557)||(18589827-18590265)
chr6 (308-359)||(34601751-34601802)
chr6 (308-359)||(34628293-34628344)
chr6 (308-359)||(34723027-34723078)
chr6 (413-470)||(5390002-5390059)
chr6 (403-488)||(16479720-16479805)
chr6 (403-488)||(18487594-18487679)
[»] scaffold0472 (1 HSPs)
scaffold0472 (455-569)||(4732-4846)
[»] scaffold0131 (1 HSPs)
scaffold0131 (325-557)||(2974-3206)
[»] scaffold0007 (1 HSPs)
scaffold0007 (434-557)||(183607-183730)
[»] scaffold0121 (1 HSPs)
scaffold0121 (517-569)||(33121-33173)
[»] scaffold0061 (1 HSPs)
scaffold0061 (512-568)||(58164-58220)
[»] scaffold0017 (1 HSPs)
scaffold0017 (512-568)||(140413-140469)


Alignment Details
Target: scaffold0034 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 22 - 566
Target Start/End: Original strand, 103956 - 104500
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||    
T  103956 ccgagtgtgggtcaccttcagtttaggaaaatctctcttttagagaggggcgggttggtcaaacccttttctgaggatgagatcaaggcggcagtgtggg 104055  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  104056 attgtgatagtttcaagagcccgggccctgatgggatcaacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgac 104155  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
     ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  ||||||||||||||    
T  104156 tgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtttcgc 104255  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  104256 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtctg 104355  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  ||||||||||    
T  104356 cttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagt 104455  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
     ||||||||||||||||||||||| ||||||||||||||||||||    
T  104456 agattttgaaaaggcgtatgattcggtagattgggggtaccttga 104500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 569
Target Start/End: Complemental strand, 47420831 - 47420284
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||||||| || ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  47420831 ccgagtgtgggtcaccttcagtttaggaaaatctctcttttagagaggggcgggttggttaaacccttttctgaggatgagatcaaggcggcagtgtggg 47420732  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  47420731 attgtgatagtttcaagagcccgggccctgatgggatccacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgac 47420632  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  ||||||||| ||||    
T  47420631 cgaattccataggaatgggaagttaacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtatcgc 47420532  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  47420531 cctatttctttggtggggagtttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtctg 47420432  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  ||||||||||    
T  47420431 cttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagt 47420332  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  47420331 ggattttgaaaaggcgtatgattcggttgattgggggtaccttgatga 47420284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 26 - 569
Target Start/End: Original strand, 1826658 - 1827201
Alignment:
Q  26 gtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattg 125  Q
    |||||||||| ||||||||  ||||||||||| || | || ||||| || ||| |||||||||||||| |||||||||||||||  ||||||||||||||    
T  1826658 gtgtgggacaccttcagttccggaaactctcttttttagacaggggaggattgattaaacccttttctgaggatgagattaaggtagcggtgtgggattg 1826757  T
Q  126 tgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaa 225  Q
    ||||||||| |||||||||| ||||||||||||  |||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||| || |||    
T  1826758 tgacagttttaagagtccgggccctgatgggatacacttgggtttttttaagtctttttggaatgagatgaaaacagatattgtgcgctttgtaactgaa 1826857  T
Q  226 ttccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcccta 325  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||| |||| |||||| |||||||||||| |||||    
T  1826858 ttccataggaatgggaaattatcgaaaggcataaattctacgttcatagccctaattcctaaagttgcttgtcctcaatctttgaatgagtttcacccta 1826957  T
Q  326 tttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttt 425  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |  | || || ||||||||||||||||| || ||||||||||||||    
T  1826958 tttctttggtggggagcatgtataaaattttggcgaaaattcttgcaaacaggctacggcatgtcattgggagtgttgtgtcagaggctcagtctgcttt 1827057  T
Q  426 tgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggat 525  Q
    ||| ||  | | ||||||||||||||| ||| ||||||||||||||||||| ||||| || |||||| || |||||||||| ||  ||||||||||||||    
T  1827058 tgttaaaaacatacaaattcttgatggaatcctgatcgctaatgaggtggtcgatgaggcaaggaaagctaagaaagatcttttgttgttcaaagtggat 1827157  T
Q  526 tttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||||||| |||||||||| ||| ||||||||||| ||||||||    
T  1827158 tttgaaaaagcgtatgattttgttgattgggggtaacttgatga 1827201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 399 - 566
Target Start/End: Original strand, 23641081 - 23641248
Alignment:
Q  399 tgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcag 498  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||    
T  23641081 tgttgtgtctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaag 23641180  T
Q  499 aaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    ||||| || ||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  23641181 aaagaccttttgttgttcaaagtagattttgaaaaggcgtatgattcggtagattgggggtaccttga 23641248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 399 - 566
Target Start/End: Original strand, 23646739 - 23646906
Alignment:
Q  399 tgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcag 498  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||    
T  23646739 tgttgtgtctgaaactcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaag 23646838  T
Q  499 aaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    ||||| || ||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  23646839 aaagaccttttgttgttcaaagtagattttgaaaaggcgtatgattcggtagattgggggtaccttga 23646906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 569
Target Start/End: Original strand, 11585359 - 11585846
Alignment:
Q  82 aaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctt 181  Q
    ||||| ||||||  |||||| |||||| | ||||||||||| ||||| ||  | |||||||| | |||||| ||||||| ||| || ||| |||||  ||    
T  11585359 aaacctttttctgtggatgaaattaagtctgcggtgtgggactgtgatagcattaagagtcctggccctgaagggatcagctttggattcattaagaatt 11585458  T
Q  182 tttggcctgagatgaaaacggatattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttat 281  Q
    |||||   |||||||| | |||||| ||||| ||||| || |||||  |||||||||| ||  |  | ||||| ||||||||||| ||||| ||  | ||    
T  11585459 tttggaacgagatgaagaaggatatagtgcgatttgttacagaatttgataggaatggaaagctgtcaaaaggtataaattctacgttcatcgctttaat 11585558  T
Q  282 ccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttg 381  Q
     ||||||||||  ||||| |||||  ||||||| ||||| ||||| ||  ||||||| ||  | || ||||||||||| ||| |||| ||||||||  |     
T  11585559 acctaaagttgagagtcctcaatcattgaatgattttcgacctatctcactggtgggaagtctctataaaattttggcaaaagttctagcaaacagactc 11585658  T
Q  382 agacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatg 481  Q
    |||||||| || |||||||| ||||| ||||  || ||| | || || ||  ||||||||||||||||||| ||  |||| ||||||||||| || ||||    
T  11585659 agacaggtcatcgggagtgtagtgtcagaagtccaatctacgttcgtcaaaaatagacaaattcttgatggaattctgatagctaatgaggttgtcgatg 11585758  T
Q  482 aagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||  | ||| || ||||||| || || ||||||||||||||||| |||||| |||| || || || ||||||||||| ||||||||    
T  11585759 aagcccgtaaaactaagaaagacctcttgatgttcaaagtggatttcgaaaagtcgtacgactcggtcgattgggggtatcttgatga 11585846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 229 - 569
Target Start/End: Original strand, 19732308 - 19732648
Alignment:
Q  229 cataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctattt 328  Q
    ||||||||||| |||||  ||||||| ||||||||||  || || || ||||| |||||||| |  ||||| |   || ||||||| ||| | || ||||    
T  19732308 cataggaatggaaaattttcgaaaggtataaattctatgtttattgctcttattcctaaagtagacagtcctcggactttgaatgatttttgacccattt 19732407  T
Q  329 ctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgt 428  Q
    | ||||||||  |  | || ||||||||||| ||  |||| ||||||| ||||||| ||||||| || ||||| ||||| || | ||| || ||||||||    
T  19732408 cgttggtgggatgtctctataaaattttggcaaaggttctagcaaacaagttgagataggttataggcagtgtcgtgtctgatgttcaatcagcttttgt 19732507  T
Q  429 gaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggatttt 528  Q
     ||  ||||||||||||||||||| |||||||| || ||||||||||||||||| ||  | |||||  ||||||| || |||||||| ||||| ||||||    
T  19732508 aaaaaatagacaaattcttgatgggatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaagtagatttt 19732607  T
Q  529 gaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||  |||  | |||||| |||||||| ||||||||    
T  19732608 gaaaaggcagatggctttgtagaatgggggtatcttgatga 19732648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 310 - 557
Target Start/End: Original strand, 3128396 - 3128643
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||||||| | || ||||||||||||||||| ||||||||||||||||| ||  |  |||| ||  | |||| |  ||| || || |||||||| || |    
T  3128396 aatgagtttaggcccatttctttggtggggagtttgtacaaaattttggcaaaggtattggctaatcgtttgaaaggggtgatcggaagtgttgtttctg 3128495  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgtt 509  Q
    || ||||  |  |||||||| || |||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |   || | |||| ||||| ||    
T  3128496 aaactcaaacaacttttgtgcagaatagacaaattcttgatggtatattgatagctaatgaggtggtggatgaagctcgccgatttaagaaggatctttt 3128595  T
Q  510 aatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
      |||| || ||  ||||||||||||||| ||||||||| ||||||||    
T  3128596 gctgtttaaggttaattttgaaaaggcgtttgattctgtggattgggg 3128643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 477
Target Start/End: Original strand, 5789251 - 5789505
Alignment:
Q  223 gaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcc 322  Q
    ||||| || |||||||| |||||  ||||||| ||||||||||| ||||| |  || || | ||||||||  |||||| | ||| ||||||| ||||  |    
T  5789251 gaatttcacaggaatggaaaattgtcgaaaggtataaattctacgttcattgttctcattcttaaagttgagagtccatagtctttgaatgattttcagc 5789350  T
Q  323 ctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgc 422  Q
    | ||||| |||||||| ||  | || |||||| |||| |||||| | ||||||||||||||||| || ||||| ||||||||||| || |  || |||||    
T  5789351 ccatttcattggtgggtagtctttataaaattatggcaaaaattttagcaaacaggttgagacatgtgattggcagtgttgtgtctgaggtgcaatctgc 5789450  T
Q  423 ttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggtt 477  Q
     ||||| ||  |||||||||||| |||||| ||  |||| |||||||||||||||    
T  5789451 ctttgtaaaaaatagacaaattcgtgatggaattctgatagctaatgaggtggtt 5789505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 118 - 560
Target Start/End: Complemental strand, 54686337 - 54685895
Alignment:
Q  118 tgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttg 217  Q
    ||||||||||||||||||||||| |||| | ||||||| |||||||| | ||| || ||    ||||||  |||  || ||  |||| || |||| ||||    
T  54686337 tgggattgtgacagtttcaagagcccgggctctgatggtatcaacttcgattttttcaaagacttttggagtgacttgcaagtggatgttatgcgttttg 54686238  T
Q  218 tgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtt 317  Q
    | |  |||||||| |||||||| || ||  ||||||| || |||||||| || |||||||| || || || ||||    ||| ||| |  | ||||| ||    
T  54686237 ttaatgaattccacaggaatggcaagttgtcgaaaggtattaattctacttttatagccctcattccaaaggttgactctcctcaaaccttaaatgattt 54686138  T
Q  318 tcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcag 417  Q
    |||||| ||||| ||| | ||  | |||||||||||| |||| ||| |  |||| || || ||||||||||||||||| |||||| | || ||  | |||    
T  54686137 tcgccccatttcattgattggcggtttgtacaaaattctggctaaattattggctaatagattgagacaggttattggtagtgttatttctgatacgcag 54686038  T
Q  418 tctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttca 517  Q
    ||||| ||||| ||| |||||||||| |||||||| ||  |||| || ||||||||||||||||| ||| | |||| | |||||||  || | ||||| |    
T  54686037 tctgcgtttgttaagaatagacaaatccttgatgggattctgattgcgaatgaggtggttgatgaggctcgtaaatgtaagaaagagatgatgatgttta 54685938  T
Q  518 aagtggattttgaaaaggcgtatgattctgtagattgggggta 560  Q
    | ||||||||||| || || ||||||| |||  ||||||||||    
T  54685937 aggtggattttgagaaagcttatgattttgttcattgggggta 54685895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 557
Target Start/End: Original strand, 7661790 - 7661956
Alignment:
Q  392 ttgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattctt-gatggtatcttgatcgctaatgaggtggttgatgaagctagga 490  Q
    |||| |||||||| || ||| ||||||||||||||||| |  ||||||| |||||| |||||||| ||||| |||||||||||||| ||||| ||| |      
T  7661790 ttggtagtgttgtttctgaaactcagtctgcttttgtgcataatagacagattctttgatggtattttgatagctaatgaggtggtggatgaggctcgac 7661889  T
Q  491 aatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
      | | |||| ||||| ||  |||| || || ||||||||||| |||||||||||||| ||||||||    
T  7661890 gttgtaagaaggatcttttgttgtttaaggtcgattttgaaaaagcgtatgattctgttgattgggg 7661956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 17437992 - 17438074
Alignment:
Q  370 gcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatgg 452  Q
    |||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| ||  |||| ||||||||||||||    
T  17437992 gcaaacgggttgagacaggtcattggaagtgttgtgtcagaacctcagtctgcttttgtaaaaaataggcaaattcttgatgg 17438074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 406 - 557
Target Start/End: Complemental strand, 20397208 - 20397057
Alignment:
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    ||||| |||||||| || ||||||||  | ||||||||| |||||| |||  | || || |||||||| || ||||| ||||||||||   |||||||||    
T  20397208 tcggatgctcagtccgcgtttgtgaaaaacagacaaatttttgatgatattcttatagcaaatgaggttgtggatgaggctaggaaattgaagaaagatc 20397109  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    | ||  |||| || ||||||||||||||||| || |||||||| ||||||||    
T  20397108 ttttgttgtttaaggtggattttgaaaaggcctaggattctgttgattgggg 20397057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 23156733 - 23156783
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtac 561  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  23156733 atgtttaaagtggattttgaaaaggcgtatgattcggtggattgggggtac 23156783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 482
Target Start/End: Complemental strand, 23280542 - 23280370
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||| ||||| || ||||||||||||||||| ||||| |||||| || | ||| |  |||| ||  | |||| |  ||| ||||| |||||||| || |    
T  23280542 aatgattttcgacccatttctttggtggggagtttgtataaaattctgacaaaattgttggctaatcgtttgaaagtggtaattggtagtgttgtttctg 23280443  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    || ||||    |||||||||||  ||||| | |||||||||||||| ||||| |||||||||||||| |||||    
T  23280442 aatctcaaatagcttttgtgaaaaatagatagattcttgatggtattttgatagctaatgaggtggtggatga 23280370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 557
Target Start/End: Original strand, 10561816 - 10561973
Alignment:
Q  400 gttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtat-cttgatcgctaatgaggtggttgatgaagctaggaaatctcag 498  Q
    ||||| ||||| |||||||| || ||||| ||  | ||||||||||| |||||||| |||| | || |||||||  || || |||||||||||||   ||    
T  10561816 gttgtttcggatgctcagtcagcgtttgttaaaaacagacaaattctggatggtattcttg-tagcgaatgaggctgtggacgaagctaggaaattgaag 10561914  T
Q  499 aaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    |||||||| ||  |||| || |||||||| |||||||| ||||| ||||| ||||||||    
T  10561915 aaagatcttttgttgtttaaggtggatttcgaaaaggcctatgactctgtcgattgggg 10561973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 19649434 - 19649385
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  19649434 aatgactttcgtcctatttccttggtggggagtttgtacaaaattttggc 19649385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 482
Target Start/End: Complemental strand, 25136753 - 25136684
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    |||||||||||||| | |||| |||||||| ||| |||||||| ||||| ||||||||| | ||||||||    
T  25136753 ctcagtctgcttttattaagggtagacaaactctagatggtattttgattgctaatgagttagttgatga 25136684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 569
Target Start/End: Original strand, 42952075 - 42952192
Alignment:
Q  452 gtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtaga 551  Q
    ||||| |||| ||||||||||| ||||||||||| || || | | |||| |||||  |  | || |||||||||||||||||| |||| ||||| || ||    
T  42952075 gtatcctgattgctaatgaggttgttgatgaagcaagcaagtttaagaaggatctcatgttatttaaagtggattttgaaaagacgtacgattcggtcga 42952174  T
Q  552 ttgggggtaccttgatga 569  Q
    |||||| || ||||||||    
T  42952175 ttggggttatcttgatga 42952192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 572
Target Start/End: Original strand, 19308102 - 19308250
Alignment:
Q  424 tttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtgg 523  Q
    ||||| || ||| ||||||| |||||||||||  |  | |||||||||||||| ||||| ||| | || |   | |||||| ||||| |||| ||||| |    
T  19308102 tttgtaaaagatcgacaaatccttgatggtattctagtagctaatgaggtggtggatgaggctcgaaagttaaaaaaagatttgttactgtttaaagttg 19308201  T
Q  524 attttgaaaaggcgtatgattctgtagattgggggtaccttgatgatgt 572  Q
    |||||||||| || ||||| || ||||||||||| || || ||||||||    
T  19308202 attttgaaaaagcatatgactcagtagattggggatatctcgatgatgt 19308250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 10561723 - 10561770
Alignment:
Q  307 ctgaatgagtttcgccctatttctttggtggggagcttgtacaaaatt 354  Q
    |||||||| ||||||||||||||||||||||| || ||||| ||||||    
T  10561723 ctgaatgattttcgccctatttctttggtgggaagtttgtataaaatt 10561770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 489
Target Start/End: Original strand, 21139973 - 21140024
Alignment:
Q  438 acaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctagg 489  Q
    ||||||||||||||| ||  | || |||||||||||||||||||||||||||    
T  21139973 acaaattcttgatggcattcttattgctaatgaggtggttgatgaagctagg 21140024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 29327016 - 29327110
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaa 198  Q
    ||||||| ||||| ||||| ||||| |||||||||||||| | ||| || ||  | ||||| ||||||||||||  |||||||| ||| ||||||    
T  29327016 ttaaggcagcggtttgggactgtgatagtttcaagagtcctggcccagacggtgtgaactttggtttctttaaggatttttggcttgatatgaaa 29327110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 32809180 - 32809122
Alignment:
Q  316 tttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaa 374  Q
    ||||| || |||||||||||||||||  |||||||||||||| | |||||||| |||||    
T  32809180 tttcgtcccatttctttggtggggagtatgtacaaaattttgacaaaaattcttgcaaa 32809122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 19649640 - 19649599
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccgg 145  Q
    ||||||| || |||||||||||||| ||||||||||||||||    
T  19649640 ttaaggcagctgtgtgggattgtgatagtttcaagagtccgg 19649599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 545
Target Start/End: Complemental strand, 17536714 - 17536678
Alignment:
Q  509 taatgttcaaagtggattttgaaaaggcgtatgattc 545  Q
    ||||||||||||||||||||||||| || ||||||||    
T  17536714 taatgttcaaagtggattttgaaaaagcatatgattc 17536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 19649232 - 19649184
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggta 560  Q
    |||| |||||||||||||||||||||||||| ||  | |||||||||||    
T  19649232 tgtttaaagtggattttgaaaaggcgtatgactcgattgattgggggta 19649184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 566
Target Start/End: Original strand, 4936241 - 4936785
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||||||| || ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  4936241 ccgagtgtgggtcaccttcagtttaggaaaatctctcttttagagaggggcgggttggttaaacccttttctgaggatgagatcaaggcggcagtgtggg 4936340  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  4936341 attgtgatagtttcaagagcccgggccctgatgggatccacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgac 4936440  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  ||||||||| ||||    
T  4936441 cgaattccataggaatgggaagttaacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtatcgc 4936540  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  4936541 cctatttctttcgtggggagtttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtctg 4936640  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  ||||||||||    
T  4936641 cttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagt 4936740  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
     ||||||||||||||||||||||| ||||||||||||||||||||    
T  4936741 agattttgaaaaggcgtatgattcggtagattgggggtaccttga 4936785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 26 - 569
Target Start/End: Complemental strand, 29969997 - 29969454
Alignment:
Q  26 gtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattg 125  Q
    |||||||||| ||||||||| |||||||||||  | |||| ||||||||||||  ||||||||||||| ||||||| |||||||| || |||||||||||    
T  29969997 gtgtgggacaccttcagtttcggaaactctcttatctcgaaaggggcgggttgactaaacccttttctgaggatgaaattaaggcagcagtgtgggattg 29969898  T
Q  126 tgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaa 225  Q
    ||||||||| |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  29969897 tgacagttttaagagtccgtgccctggtgggatcaacttgggtttctttaagtctttttggcctgagataaaaacagatttagtgcgatttgtaaccgaa 29969798  T
Q  226 ttccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcccta 325  Q
    || ||||||||||| |||||| ||||||  ||||||||||| ||||| ||||| || ||||||||||| |||||||||||| ||||||||||||| ||||    
T  29969797 tttcataggaatggaaaattagcgaaagacataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctttgaatgagtttcggccta 29969698  T
Q  326 tttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttt 425  Q
    ||||||| ||||||||| |||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  29969697 tttctttagtggggagcatgtataaaattctggcgaaaattctagctaacaggttgaggcaggttattgggagtgttgtgtccgaggctcagtctgcttt 29969598  T
Q  426 tgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggat 525  Q
    ||| ||  | ||||||||||||||||||||  ||||||||||||||||||| ||||| || ||||||  | ||||||||||  |  ||||||||||||||    
T  29969597 tgttaaaaacagacaaattcttgatggtattctgatcgctaatgaggtggtagatgaggcaaggaaacttaagaaagatcttctgttgttcaaagtggat 29969498  T
Q  526 tttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  29969497 tttgaaaaggcgtttgattctgttgattgggggtaccttgatga 29969454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 80 - 569
Target Start/End: Complemental strand, 17722604 - 17722115
Alignment:
Q  80 ttaaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtc 179  Q
    |||||||||||  | |||| || |||||||| |||||||||||||||||||| | ||| | |||||  || |||||||| |||||||||||| |||||||    
T  17722604 ttaaaccctttcatgaggaagaaattaaggcagcggtgtgggattgtgacagctacaaaattccgggtccagatgggattaacttgggtttcattaagtc 17722505  T
Q  180 tttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagccctt 279  Q
     |||||||  ||||||||| | || |||||||| ||||| |||||||||||||||||| |||||||| ||||||| || |||||||  ||||| |||||     
T  17722504 cttttggcacgagatgaaagcagaaattgtgcgttttgttaccgaattccataggaataggaaattatcgaaaggtattaattctaggttcatcgcccta 17722405  T
Q  280 atccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggt 379  Q
    || |||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||||||| ||||||||||    
T  17722404 attcctaaagtagctagtcctcaatcgttgaatgagtttcgccctatttctttggtggggagtctgtataaaattttagcgaaaattctagcaaacaggt 17722305  T
Q  380 tgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttga 479  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||  | ||||| ||||||||||| || |||||| ||||||||||||| ||    
T  17722304 tgagacaggttattgggagtgttgtgtcagaagttcagtctgcttttgttaaaaacagacagattcttgatggaattttgatcactaatgaggtggtcga 17722205  T
Q  480 tgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||| |||||||||||| ||||||| || ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  17722204 tgaggctaggaaatctaagaaagaccttttattgtttaaagtggattttgaaaaggcgtatgattctgttgattgggggtatcttgatga 17722115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 557
Target Start/End: Complemental strand, 34233363 - 34233193
Alignment:
Q  387 ggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagct 486  Q
    ||||||||||  |||| | ||||| |||||||| || ||||| ||  ||||||||||||||||||||||  | || || |||||||  || ||||| |||    
T  34233363 ggttattgggtctgttatttcggacgctcagtcagcgtttgttaaaaatagacaaattcttgatggtattcttatagcgaatgaggcagtggatgaggct 34233264  T
Q  487 aggaaatctca-gaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||| ||| | ||||||||| || |||||||| |||||||||||||| || ||||| ||||| || |||||    
T  34233263 aggaa-tctgaagaaagatcttttgatgttcaaggtggattttgaaaaagcctatgactctgtcgactgggg 34233193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 20696167 - 20696225
Alignment:
Q  79 gttaaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttcaa 137  Q
    |||||||||||||  | ||| ||||||||||| ||||||||||||||||| ||||||||    
T  20696167 gttaaaccctttttgatggaggagattaaggcagcggtgtgggattgtgatagtttcaa 20696225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 20701645 - 20701703
Alignment:
Q  79 gttaaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttcaa 137  Q
    |||||||||||||  | ||| ||||||||||| ||||||||||||||||| ||||||||    
T  20701645 gttaaaccctttttgatggaggagattaaggcagcggtgtgggattgtgatagtttcaa 20701703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 47550463 - 47550405
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| |||||||    
T  47550463 atgtttaaagtggattttgaaaaagcttatgattctgttgattggggttacattgatga 47550405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 47554928 - 47554870
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| |||||||    
T  47554928 atgtttaaagtggattttgaaaaagcttatgattctgttgattggggttacattgatga 47554870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 482
Target Start/End: Original strand, 20703978 - 20704047
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    ||||||| |||||| | |||| |||||||||||||||||| || ||||| ||||||||| | ||||||||    
T  20703978 ctcagtccgcttttataaagggtagacaaattcttgatgggattttgattgctaatgagttagttgatga 20704047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 482
Target Start/End: Original strand, 20872022 - 20872091
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    ||||||| |||||| | |||| |||||||||||||||||| || ||||| ||||||||| | ||||||||    
T  20872022 ctcagtccgcttttataaagggtagacaaattcttgatgggattttgattgctaatgagttagttgatga 20872091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 33795271 - 33795312
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccgg 145  Q
    ||||||| || |||||||||||||||||||||||||||||||    
T  33795271 ttaaggcagctgtgtgggattgtgacagtttcaagagtccgg 33795312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 45994315 - 45994266
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  45994315 aatgactttcgtcctatttccttggtggggagtttgtacaaaattttggc 45994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 545
Target Start/End: Complemental strand, 13441694 - 13441562
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaat 512  Q
    ||||||| |||||||| ||| ||||||||||  | ||||||||  |||| ||||| || || || ||||||||| | |||||| | ||||| ||  |  |    
T  13441694 ctcagtcggcttttgtcaagaatagacaaatcttggatggtattctgattgctaacgaagttgtcgatgaagcttgtaaatctaaaaaagagcttatgtt 13441595  T
Q  513 gttcaaagtggattttgaaaaggcgtatgattc 545  Q
    ||| || ||||||||||||||||| ||||||||    
T  13441594 gtttaaggtggattttgaaaaggcttatgattc 13441562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 557
Target Start/End: Complemental strand, 4079012 - 4078765
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||||||||| ||||||||||||||||| || ||||| |||||| | || ||| |  | || ||  | ||| |   |||||||||   |||| | ||||    
T  4079012 aatgagtttcgacctatttctttggtgggaagtttgtataaaattctagccaaattattagctaatcgattgcgtgtggttattggttctgttatttcgg 4078913  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgtt 509  Q
    | |||||||| || ||||| ||  | ||| |||||||||| |||||  | || || |||||||  || ||||| ||| ||||||   |||||||||| ||    
T  4078912 atgctcagtcggcgtttgttaaaaacagataaattcttgacggtattcttatagcaaatgaggctgtggatgaggctgggaaattgaagaaagatctttt 4078813  T
Q  510 aatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
      ||||||| |||||||| |||||||| ||||| ||||| ||||||||    
T  4078812 gttgttcaaggtggatttcgaaaaggcttatgactctgtcgattgggg 4078765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 43573220 - 43573105
Alignment:
Q  370 gcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatg 469  Q
    |||||||| ||||||  ||| ||||| |||||  | || ||| | |||||||||||| | ||| ||||||| ||||||||||||||  | || || ||||    
T  43573220 gcaaacagattgagattggtgattggtagtgtgatttctgaaacacagtctgcttttattaagaatagacagattcttgatggtattcttatagccaatg 43573121  T
Q  470 aggtggttgatgaagc 485  Q
    ||||||| ||||||||    
T  43573120 aggtggtggatgaagc 43573105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 569
Target Start/End: Complemental strand, 45460915 - 45460792
Alignment:
Q  446 ttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattc 545  Q
    |||||||||| ||  | |||||||||||||||||||| ||  | || |   |||||||  ||||| |||| ||||| ||||||||||| |||||||| ||    
T  45460915 ttgatggtattttagtagctaatgaggtggttgatgaggcccgcaagttgaagaaagaattgttattgtttaaagtagattttgaaaaagcgtatgactc 45460816  T
Q  546 tgtagattgggggtaccttgatga 569  Q
     || |||||||| || ||||||||    
T  45460815 ggttgattggggatatcttgatga 45460792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 12123225 - 12123175
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtac 561  Q
    ||||| ||||||||||||||||||| ||||||||| || |||||| |||||    
T  12123225 atgtttaaagtggattttgaaaaggtgtatgattcggtggattggaggtac 12123175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 569
Target Start/End: Original strand, 22864330 - 22864388
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| ||||||||||||||||| || ||||||||||  |||||||| ||| |||||||    
T  22864330 atgtttaaagtggattttgaaaaagcttatgattctgatgattggggctacattgatga 22864388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 22864232 - 22864289
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  22864232 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 22864289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 47550561 - 47550504
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  47550561 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 47550504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 47555026 - 47554969
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  47555026 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 47554969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 45994113 - 45994065
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggta 560  Q
    |||| |||||||||||||||||||||||||| ||  | |||||||||||    
T  45994113 tgtttaaagtggattttgaaaaggcgtatgactcgattgattgggggta 45994065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 45994521 - 45994481
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccg 144  Q
    ||||||| || |||||||||||||| |||||||||||||||    
T  45994521 ttaaggcagctgtgtgggattgtgatagtttcaagagtccg 45994481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 22 - 569
Target Start/End: Complemental strand, 2366305 - 2365758
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||    
T  2366305 ccgagtgtgggtcaccttcagtttaggaaaatctctcttttagagaggggcgggttggtcaaacccttttctgaggatgagatcaaggcggcagtgtggg 2366206  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  2366205 attgtgatagtttcaagagcccgggccctgatgggatcaacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgac 2366106  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
     ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||| || |||||  ||||||||||||||    
T  2366105 tgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagtggctagccctcaatcgttgaatgagtttcgc 2366006  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  2366005 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtctg 2365906  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    ||||||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||| || |||| |||| ||||||| || ||  ||||||||||    
T  2365905 cttttgtgaaggatagacaaattattgatggtatcttgattgtgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagt 2365806  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2365805 agattttgaaaaggcgtatgattcggtagattgggggtaccttgatga 2365758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 37 - 568
Target Start/End: Original strand, 19918360 - 19918891
Alignment:
Q  37 cttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttca 136  Q
    ||||||||||||||||||||  || | |||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||| |    
T  19918360 cttcagtttaggaaactctccatttttgagaggggcgggttggttaaacccttttctgaggatgagattaaggcggcagtttgggattgtgatagtttta 19918459  T
Q  137 agagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaattccataggaa 236  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||| || ||  |||||||||||||||||||||| ||||||||    
T  19918460 agagtccgggccctgatgggatcaacttgggtttttttaagtctttctggcctgagttgaagactgaccttgtgcgctttgtgaccgaatttcataggaa 19918559  T
Q  237 tgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttggtg 336  Q
    |||||||||||||||||| || ||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  19918560 tgggaaattaacgaaaggcatcaattctacattcataacctttattcctaaagttgctagtccacaatctttgaatgagttccgccctatttctttggtg 19918659  T
Q  337 gggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggata 436  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  19918660 gggagcttgtacaaaattttggcgaaaatcctagcaaacaggttgaggtaggttattgggagtgttgtggcggaaactcagtctgcttttgtgaaggata 19918759  T
Q  437 gacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggc 536  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || |||||| || ||||||| || ||  |||||||||||||||||||||||||    
T  19918760 gacaaattcttgatggtatcttgatcgcgaatgaggtggttgatgaggccaggaaaactaagaaagaccttttgttgttcaaagtggattttgaaaaggc 19918859  T
Q  537 gtatgattctgtagattgggggtaccttgatg 568  Q
    |||||||||||||||||||||||| |||||||    
T  19918860 gtatgattctgtagattgggggtatcttgatg 19918891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 104 - 569
Target Start/End: Complemental strand, 16186256 - 16185791
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacgga 203  Q
    |||||||||| |||||||| ||||| ||||| ||||||| || ||| ||||| |||||||| || ||| |||||  ||| |||| ||||||||||   ||    
T  16186256 ttaaggcggcagtgtgggactgtgatagttttaagagtctgggcccggatggaatcaactttgggttcattaagaatttctggcatgagatgaaagacga 16186157  T
Q  204 tattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaa 303  Q
    |||| |||| |||      ||||| |||||||||||||||||  ||||||| ||||||||||| ||||| || || ||  |||||||||  ||| | ||     
T  16186156 tattttgcggtttactttagaatttcataggaatgggaaattgtcgaaaggtataaattctacgttcattgcactgattgctaaagttgagagtacccag 16186057  T
Q  304 tctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttg 403  Q
    ||| ||||||| ||||| || ||||| |||||||| ||  | || ||||||||||| |||||| | |||||||||||||||||||| ||||  |||||||    
T  16186056 tctttgaatgattttcgacccatttcgttggtgggtagtctttataaaattttggcaaaaattttagcaaacaggttgagacaggtgattgccagtgttg 16185957  T
Q  404 tgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaaga 503  Q
    |||| || |  || ||||| ||||| ||  ||||||||||||||||||  ||  |||| ||||||||||||||| |||| ||| | |||||  | |||||    
T  16185956 tgtctgaggtgcaatctgcctttgtaaaaaatagacaaattcttgatgcaattatgatagctaatgaggtggttaatgaggctcgtaaatcgaataaaga 16185857  T
Q  504 tctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
     || || ||||| |||| ||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  16185856 gctattgatgtttaaagcggactttgaaaaggcgtatgactctgttgagtgggggtaccttgatga 16185791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 229 - 569
Target Start/End: Original strand, 961483 - 961823
Alignment:
Q  229 cataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctattt 328  Q
    ||||||||||| |||||  | ||||| ||||||||||| || || || ||||| ||||||||||  ||||| ||  |  ||||||| ||| | || ||||    
T  961483 cataggaatggaaaattgtcaaaaggtataaattctacgtttattgctcttattcctaaagttgacagtcctcagacattgaatgatttttgacccattt 961582  T
Q  329 ctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgt 428  Q
      ||||||||  || | || |||||| |||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||| |||| ||| || ||||| ||    
T  961583 tgttggtgggatgcctctataaaattctggcaaaagttctggcgaacaggttgagacagattattggcagtgttgtgtctgaagttcaatcagctttcgt 961682  T
Q  429 gaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggatttt 528  Q
     ||  ||||||||||||||||||| |||||||| || ||||||||||||||||| ||  | |||||  ||||||| || |||||||| ||||| ||||||    
T  961683 taaaaatagacaaattcttgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaagtagatttt 961782  T
Q  529 gaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||||||||||||| || |||||||||  ||| ||||||||    
T  961783 gaaaaggcgtatgactccgtagattggacgtatcttgatga 961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 103 - 566
Target Start/End: Original strand, 12333282 - 12333745
Alignment:
Q  103 attaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacgg 202  Q
    |||||| ||||||||||||||||||| || || || ||||||| ||| ||||  || || || |||||| |||||  |||||||  |||||||||   ||    
T  12333282 attaagacggcggtgtgggattgtgaaagctttaaaagtccgggccccgatgacattaattttggtttcattaagaatttttggaatgagatgaaggagg 12333381  T
Q  203 atattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccaca 302  Q
    || ||||| | ||||| || ||||| |||||||| ||||  ||  ||||||| |||||| |||| ||||| ||||||||||||||||| |   | || ||    
T  12333382 atgttgtgagatttgttactgaatttcataggaacgggatgttgtcgaaaggtataaatgctacgttcattgcccttatccctaaagtagagtgccctca 12333481  T
Q  303 atctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgtt 402  Q
    |||  ||||||| ||| | || ||||| |||||||||||  | || |||||| |||| ||  |||| || || |||||| | ||||||||||||||||||    
T  12333482 atccttgaatgattttagaccgatttcgttggtggggagtctttataaaattatggcaaagcttctagctaataggttgcgtcaggttattgggagtgtt 12333581  T
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaag 502  Q
    ||||| || | ||| ||  | ||||| ||  |||| |||||||||||||| ||  |||| || |||||||||||| |||| |||   || ||  ||||||    
T  12333582 gtgtctgatgttcaatccacgtttgttaaaaataggcaaattcttgatggaattctgatagccaatgaggtggttaatgaggctcataagtccaagaaag 12333681  T
Q  503 atctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    |||||||  |||| |||||||||||||||||||||||||| || || || |||||||| |||||    
T  12333682 atctgttgttgtttaaagtggattttgaaaaggcgtatgactcagttgactgggggtatcttga 12333745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 322 - 482
Target Start/End: Original strand, 30165736 - 30165896
Alignment:
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||| |||||||||||| | ||||||||||||||||| ||| |  |||| ||  | ||||    ||| ||||| |||||||| || ||| |||||||||    
T  30165736 cctatctctttggtggggtgtttgtacaaaattttggcaaaattattggctaatcgtttgaaggtggtgattggtagtgttgtttctgaaactcagtctg 30165835  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    |||||||| |  ||||||| |||||||||||||| ||||| |||||||| ||||| |||||    
T  30165836 cttttgtgcataatagacagattcttgatggtattttgatagctaatgaagtggtggatga 30165896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 569
Target Start/End: Original strand, 21738973 - 21739154
Alignment:
Q  388 gttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagcta 487  Q
    |||||||| ||||| ||||| ||  ||||||| || ||||| ||| |  ||||| |||||||||| ||  |||| ||||||||||| ||||||||||| |    
T  21738973 gttattggcagtgtcgtgtccgatactcagtcggcctttgttaagaagtgacaagttcttgatggaattctgatagctaatgaggttgttgatgaagcaa 21739072  T
Q  488 ggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    | || |   |||| || ||  |  |||| ||||||||||||||||||||||| ||||| ||  ||||||| |||||||||||    
T  21739073 gtaagttcaagaaggacctcatgttgtttaaagtggattttgaaaaggcgtacgattcggtcaattggggttaccttgatga 21739154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 553
Target Start/End: Complemental strand, 8131799 - 8131469
Alignment:
Q  223 gaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcc 322  Q
    ||||| || ||||||||||| ||| | || || || |||||||| || ||||| || || ||||| || | |  ||| |||||| | ||||| ||||| |    
T  8131799 gaatttcacaggaatgggaagttatcaaagggtatcaattctacgtttatagctctcattcctaaggtagattctcctcaatctttaaatgattttcgtc 8131700  T
Q  323 ctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgc 422  Q
    ||||||||||||| || || ||||| ||||||||||| ||  |  |||| || |||||||||||||| || || |||||| | || || | |||| ||||    
T  8131699 ctatttctttggtcggaagtttgtataaaattttggctaagttgttggccaataggttgagacaggtaataggtagtgttatttctgatgttcagactgc 8131600  T
Q  423 ttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtg 522  Q
     ||||| ||  || | |||||| | ||||| ||  |||| || |||||||| || ||||| ||| | ||  || | || ||  |||| ||||| ||||||    
T  8131599 gtttgttaaaaatcgtcaaattttagatggcattctgattgcgaatgaggttgtggatgaggctcgtaagactaaaaaggaattgttgatgtttaaagtg 8131500  T
Q  523 gattttgaaaaggcgtatgattctgtagatt 553  Q
    |||||||| || |||||||||||||| ||||    
T  8131499 gattttgagaaagcgtatgattctgttgatt 8131469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 535
Target Start/End: Original strand, 17076763 - 17076928
Alignment:
Q  370 gcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatg 469  Q
    ||||||| |||||||| ||||| ||| |||||| |||| |||| ||| ||||| ||||| ||  |||||||||| |||||||| ||  ||||  | ||||    
T  17076763 gcaaacaagttgagacgggttaatggaagtgttctgtcagaagttcaatctgcctttgtaaaaaatagacaaatacttgatggaattctgataccaaatg 17076862  T
Q  470 aggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaagg 535  Q
    ||||||||||||| |||   |||||  ||||||| ||  |  |||||||||| || ||||||||||    
T  17076863 aggtggttgatgaggctcacaaatcgaagaaagagcttatgttgttcaaagttgactttgaaaagg 17076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 17152393 - 17152439
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||    
T  17152393 atgtttaaagtggattttgaaaaggcgtatgattcggtggattgggg 17152439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 566
Target Start/End: Complemental strand, 16665618 - 16665563
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| ||||    
T  16665618 atgtttaaagtggattttgaaaaagcttatgattctgttgattggggctacattga 16665563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 9827299 - 9827345
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||| |||||||||||||||||||||||||| || || ||||||||    
T  9827299 atgtttaaagtggattttgaaaaggcgtatgactcggtggattgggg 9827345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 10621022 - 10621071
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||| ||||| ||||| ||||||||||||||  ||||||||||||||||    
T  10621022 aatgattttcgtcctatctctttggtggggagtatgtacaaaattttggc 10621071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 482
Target Start/End: Original strand, 11757513 - 11757582
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    |||||||||| ||||| ||  |||||||||| || |||||||| ||||  || |||||||||||||||||    
T  11757513 ctcagtctgcatttgttaaaaatagacaaatgctagatggtattttgagtgcaaatgaggtggttgatga 11757582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 545
Target Start/End: Complemental strand, 23921882 - 23921849
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattc 545  Q
    |||| |||||||||||||||||||||||||||||    
T  23921882 tgtttaaagtggattttgaaaaggcgtatgattc 23921849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 22 - 566
Target Start/End: Complemental strand, 7926412 - 7925869
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||||||| || ||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||    
T  7926412 ccgagtgtgggtcaccttcagtttagaaaa-tctctcttttagagaggggcgggttggtcaaacccttttctgaggatgagatcaaggcggcagtgtggg 7926314  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  7926313 attgtgatagtttcaagagcccgggccctgatgggatcaacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgac 7926214  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
     ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  ||||||||||||||    
T  7926213 tgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtttcgc 7926114  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  7926113 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactcagtctg 7926014  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  ||||||||||    
T  7926013 cttttgtgaaggatagacaaatttttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagt 7925914  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
     |||||||||||| |||||||||| ||||||||||||||||||||    
T  7925913 agattttgaaaagtcgtatgattcggtagattgggggtaccttga 7925869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 569
Target Start/End: Original strand, 41663481 - 41664028
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||||| |||||| ||||||||| ||||||||||| |||| || |||||||| ||| |||||||||||||| ||||||| |||||||| ||||||||||    
T  41663481 ccgagtgcgggacaccttcagtttcggaaactctcttttatagaaaggggcggtttgattaaacccttttctgaggatgaaattaaggcagcggtgtggg 41663580  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||    
T  41663581 attgtgacagtttcaagagtctgggccctgatgggatcaatttgggtttctttaagtctttttggcatgagatgaaaacagatattgtgcgctttgttac 41663680  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
     ||||||||||||||| | |||||| |||||||  ||||  |||| |||||| || | || ||||||||| | ||||| |||||| ||||||||||||      
T  41663681 tgaattccataggaatagaaaattatcgaaaggcgtaaacgctacgttcataaccttaattcctaaagttacaagtcctcaatctttgaatgagtttcag 41663780  T
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    |||||||| |||||||||||| |||| ||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  41663781 cctatttccttggtggggagcatgtataaaattttgacgaaaattctagcaaataggttgaggcaggttattgggagtgttgtgtcagaagctcagtctg 41663880  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    ||||||| ||  | |||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||| |||||||||| ||  ||||||||||    
T  41663881 cttttgttaaaaacagacaaattcttgatggtattttgatcgctaatgaggtggtcgatgaggcaaggaaatctaagaaagatcttttgttgttcaaagt 41663980  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||    
T  41663981 agattttgaaaaggcgtatgattctgttgattgggggtaccttgatga 41664028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 26 - 569
Target Start/End: Complemental strand, 20492801 - 20492258
Alignment:
Q  26 gtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattg 125  Q
    |||||||||| || |||||| |||||||||||  | | || ||||||||||||  ||||||||||||| ||||||| |||||||| || |||||||||||    
T  20492801 gtgtgggacacctccagtttcggaaactctcttatcttgaaaggggcgggttgactaaacccttttctgaggatgaaattaaggcagcagtgtgggattg 20492702  T
Q  126 tgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaa 225  Q
    ||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  20492701 tgaaagttttaagagtccgggccctgatgggttcaacttgggtttctttaagtctttttggcctgagataaaaacagatttagtgcgatttgtaaccgaa 20492602  T
Q  226 ttccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcccta 325  Q
    || ||||||||||| |||||| ||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  20492601 tttcataggaatggaaaattagcgaaaggcataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctctgaatgagtttcggccta 20492502  T
Q  326 tttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttt 425  Q
    | ||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||    
T  20492501 tctctttagtggggagcatgtataaaattctggcgaaaattctggccaacaggttgaggcaggttattgggagtgtagtgtccgaggctcagtctgcttt 20492402  T
Q  426 tgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggat 525  Q
    ||| ||  | ||||||||||||||||| ||  ||||||||||||||||||| ||||| |||||||||  | ||||||| ||  |  ||||||||||||||    
T  20492401 tgttaaaaacagacaaattcttgatggaattctgatcgctaatgaggtggtagatgaggctaggaaacttaagaaagaacttctgttgttcaaagtggat 20492302  T
Q  526 tttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||    
T  20492301 tttgaaaaggcgtttgattctgttgattgggggtatcttgatga 20492258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 26 - 569
Target Start/End: Complemental strand, 8301826 - 8301283
Alignment:
Q  26 gtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattg 125  Q
    |||||||||| || |||||| |||||||||||  | | || ||||||||||||  ||||||||||||| ||||||| |||||||| || |||||||||||    
T  8301826 gtgtgggacacctccagtttcggaaactctcttatcttgaaaggggcgggttgactaaacccttttctgaggatgaaattaaggcagcagtgtgggattg 8301727  T
Q  126 tgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaa 225  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  8301726 tgacagttttaagagtccgggccctgatgggttcaacttgggtttctttaagtctttttggcctgagataaaaacagatttagtgcgatttgtaaccgaa 8301627  T
Q  226 ttccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcccta 325  Q
    || ||||||||||| |||||| ||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  8301626 tttcataggaatggaaaattagcgaaaggcataaattctacgttcattgccctaattcctaaagttgcaagtccacaatctctgaatgagtttcggccta 8301527  T
Q  326 tttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttt 425  Q
    | ||||| ||||||||| |||| |||||| ||||||||||||| || ||||||||||| |||||||| |||||||| ||||| || ||||||||||||||    
T  8301526 tctctttagtggggagcatgtataaaattctggcgaaaattctagccaacaggttgaggcaggttatggggagtgtagtgtccgaggctcagtctgcttt 8301427  T
Q  426 tgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggat 525  Q
    ||| ||  | ||||||||||||||||| ||  ||||||||||||||||||| ||||| |||||||||  | ||||||| ||  |  ||||||||||||||    
T  8301426 tgttaaaaacagacaaattcttgatggaattctgatcgctaatgaggtggtagatgaggctaggaaacttaagaaagaacttctgttgttcaaagtggat 8301327  T
Q  526 tttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||    
T  8301326 tttgaaaaggcgtttgattctgttgattgggggtatcttgatga 8301283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 80 - 561
Target Start/End: Original strand, 13877655 - 13878139
Alignment:
Q  80 ttaaacccttttctaaggatgagattaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtc 179  Q
    ||||||| ||||||  ||| |||||||||||  |||||||||| ||||||||||| ||||||||||  || ||||| ||||| || || ||  | |||      
T  13877655 ttaaacctttttctgtggaagagattaaggcaacggtgtgggactgtgacagttttaagagtccggggccagatggtatcaattttggatttatcaagga 13877754  T
Q  180 tttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagccctt 279  Q
    ||||||| ||||||||||    ||||||||| | ||| | || |||||||||||||||||||  ||  ||||||| || |||||||| ||||| || |||    
T  13877755 tttttggactgagatgaaggatgatattgtgagttttataactgaattccataggaatgggaggttgtcgaaaggtattaattctacgttcattgctctt 13877854  T
Q  280 atccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttggtgggg---agcttgtacaaaattttggcgaaaattctggcaaaca 376  Q
    || ||||||||||  |||||||||||  |||||||||| || ||||| || |||||||||   ||  | || ||||| ||||| |||||||||||||| |    
T  13877855 attcctaaagttgagagtccacaatccttgaatgagttccgacctatatcgttggtgggggggagtctttataaaatattggcaaaaattctggcaaata 13877954  T
Q  377 ggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggt 476  Q
    || |||||||||| |||||||| || |||||||| ||||| | ||| ||||| || || |  |||||||||||||||||  |||||||||||||||||||    
T  13877955 ggctgagacaggtcattgggagcgtggtgtcggatgctcaatatgcgtttgtaaaagacatgcaaattcttgatggtattctgatcgctaatgaggtggt 13878054  T
Q  477 tgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtac 561  Q
    |||||| ||| | |||||  |||| ||| ||||  |||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  13878055 tgatgaggctcgtaaatccaagaaggatatgttgttgtttaaagtggattttgaaaaggcgtatgactctgttgattgggggtac 13878139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 103 - 566
Target Start/End: Complemental strand, 20826246 - 20825783
Alignment:
Q  103 attaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacgg 202  Q
    |||||| ||||||||||||||||||| || || || ||||||| ||| ||||| || || || |||||| |||||  |||||||  ||||||||||  ||    
T  20826246 attaagtcggcggtgtgggattgtgatagctttaaaagtccgggccccgatggcattaattttggtttcattaagaatttttggaatgagatgaaagagg 20826147  T
Q  203 atattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccaca 302  Q
    || ||||| | ||||| || || || |||||||||||||  ||  ||||||| |||||| |||| ||||| |||||||| |||||||| |   | || ||    
T  20826146 atgttgtgagatttgttactgagtttcataggaatgggaggttgtcgaaaggtataaatgctacgttcattgcccttatacctaaagtagagtgccctca 20826047  T
Q  303 atctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgtt 402  Q
    ||| |||||||| ||| | || ||||| |||||||||||  | || ||||||||||| ||  || | || || ||||||   ||||||||||||||||||    
T  20826046 atccctgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaagcttttagctaataggttgcttcaggttattgggagtgtt 20825947  T
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaag 502  Q
    |||||||| | |||||| || ||||| ||  |||| || ||||||||||| ||  |||| |||||||||||||||||||| ||| | || ||| ||||||    
T  20825946 gtgtcggacgttcagtccgcgtttgttaaaaataggcatattcttgatggcattctgatagctaatgaggtggttgatgaggctcgtaagtctaagaaag 20825847  T
Q  503 atctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    |||||||  |||| |||||||||||||| ||||||||||| || || || |||||||| |||||    
T  20825846 atctgttgttgtttaaagtggattttgagaaggcgtatgactcagttgactgggggtatcttga 20825783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 557
Target Start/End: Complemental strand, 17660484 - 17660333
Alignment:
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    ||||| ||||||||||| ||||| ||  | |||||||||||||| |||||  | || || |||||||  || ||||| ||||||||||   |||||||||    
T  17660484 tcggatgctcagtctgcgtttgttaaaaacagacaaattcttgacggtattcttatagcaaatgaggctgtggatgaggctaggaaattaaagaaagatc 17660385  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    | ||  |||| || ||||||||||||||||| ||||||||||| ||||||||    
T  17660384 ttttgttgtttaaggtggattttgaaaaggcctatgattctgtcgattgggg 17660333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 486
Target Start/End: Original strand, 43247014 - 43247112
Alignment:
Q  388 gttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagct 486  Q
    |||||||| |||||||| || ||  ||||||| |||||||||||| |  ||||||| |||||||||||  |||| |||||||| || ||||||||||||    
T  43247014 gttattggcagtgttgtctccgagactcagtcggcttttgtgaagaagcgacaaatccttgatggtattctgatagctaatgaagttgttgatgaagct 43247112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 557
Target Start/End: Complemental strand, 36158789 - 36158645
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaat 512  Q
    ||||||| || ||||| ||  |||||||||||||||| |||||  | || ||||||||||| || |||||||||   ||||   ||||||||||  |  |    
T  36158789 ctcagtcagcgtttgttaaaaatagacaaattcttgacggtattcttatagctaatgaggttgtggatgaagctcaaaaattaaagaaagatcttatgtt 36158690  T
Q  513 gttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||| || ||||||||||||||||| ||||| ||||| ||||||||    
T  36158689 gtttaaggtggattttgaaaaggcttatgactctgttgattgggg 36158645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 569
Target Start/End: Original strand, 10800263 - 10800321
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| |||||||    
T  10800263 atgtttaaagtggattttgaaaaagcttatgattctgttgattggggttacattgatga 10800321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 557
Target Start/End: Original strand, 16374593 - 16374751
Alignment:
Q  399 tgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcag 498  Q
    |||||| || || |||||||| || ||||| ||| ||||||||||| | ||||||||  |||| ||||| || || || ||||||||||| |||||| |     
T  16374593 tgttgtttcagaggctcagtcggcctttgtcaagaatagacaaattttggatggtattctgattgctaacgaagttgtcgatgaagctagtaaatctaaa 16374692  T
Q  499 aaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||| ||  |  |||| || ||||| ||||||||| | |||||||| || ||||||||    
T  16374693 aaagagcttatgttgtttaaggtggactttgaaaagacttatgattcggtggattgggg 16374751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 4986466 - 4986515
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  4986466 aatgactttcgtcctatttccttggtggggagtttgtacaaaattttggc 4986515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 12333791 - 12333760
Alignment:
Q  106 aaggcggcggtgtgggattgtgacagtttcaa 137  Q
    ||||||||||||||||||||||||||||||||    
T  12333791 aaggcggcggtgtgggattgtgacagtttcaa 12333760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 4986260 - 4986301
Alignment:
Q  104 ttaaggcggcggtgtgggattgtgacagtttcaagagtccgg 145  Q
    ||||||| || |||||||||||||| ||||||||||||||||    
T  4986260 ttaaggcagctgtgtgggattgtgatagtttcaagagtccgg 4986301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 10800165 - 10800222
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  10800165 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 10800222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 27 - 566
Target Start/End: Complemental strand, 6052625 - 6052086
Alignment:
Q  27 tgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattgt 126  Q
    |||||| || ||||| ||||||||| |||||||| | ||||||||||| ||||| |||||||||||| |||||||||| |||||||| ||||||||||||    
T  6052625 tgtgggtcaccttcaatttaggaaaatctctcttttagagaggggcggattggtcaaacccttttctgaggatgagatcaaggcggcagtgtgggattgt 6052526  T
Q  127 gacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaat 226  Q
    || ||||||||||| || |   |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||    
T  6052525 gatagtttcaagagcccaggttctgatgggatcaacttgggtttttttaagtctttttggcctgagatgaaaacagagcttgtgcgctttgtgactgaat 6052426  T
Q  227 tccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctat 326  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  |||||||||||||||||||    
T  6052425 tccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgagtttcgccctat 6052326  T
Q  327 ttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgctttt 426  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  6052325 ttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaagttgaggcaggttattgggagtgttgtgtctgaaactcagtctgctttt 6052226  T
Q  427 gtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggatt 526  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  |||||||||| ||||    
T  6052225 gtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgttcaaagtagatt 6052126  T
Q  527 ttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  6052125 ttgaaaaggcgtatgattcggtagattgggggtaccttga 6052086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 322 - 569
Target Start/End: Complemental strand, 35542761 - 35542514
Alignment:
Q  322 cctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctg 421  Q
    ||||| ||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  35542761 cctatctctttagtggggagcatgtataaaattctggcgaaaattctggccaacaggttgaggcaggttattgggagtgtagtgtccgaggctcagtctg 35542662  T
Q  422 cttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagt 521  Q
    ||||||| ||  | ||||||||||||||||| ||  ||||||||||||||||||| ||||| |||||||||  | ||||||| ||  |  ||||||||||    
T  35542661 cttttgttaaaaacagacaaattcttgatggaattctgatcgctaatgaggtggtagatgaggctaggaaacttaagaaagaacttctgttgttcaaagt 35542562  T
Q  522 ggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  35542561 ggattttgaaaaggcgtttgattctgttgattgggggtatcttgatga 35542514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 206 - 569
Target Start/End: Original strand, 47621372 - 47621735
Alignment:
Q  206 ttgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatc 305  Q
    ||||||| |||||  | ||||| ||||||||||| || ||| ||||||| ||||||||||| ||||| ||  | || ||||||||||  ||||| |||||    
T  47621372 ttgtgcgatttgtttcagaatttcataggaatggtaagttatcgaaaggtataaattctacgttcattgctttaattcctaaagttgagagtcctcaatc 47621471  T
Q  306 tctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtg 405  Q
    | ||||||| ||||| ||||||||| ||||||| ||  | || |||| |||||| |||||||| ||||||||| |  |||| || ||||||||||| |||    
T  47621472 tttgaatgattttcgtcctatttctctggtgggaagtctctataaaagtttggcaaaaattctagcaaacaggcttcgacaagtcattgggagtgtagtg 47621571  T
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    || ||||  | |||||| ||||| |  |||||||||||||||||||| ||  |||| ||||||||||| || ||||| ||| | ||| |  ||||||| |    
T  47621572 tcagaagtgcggtctgcgtttgttagagatagacaaattcttgatggaattctgatagctaatgaggttgtcgatgaggctcgaaaaaccaagaaagacc 47621671  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    | ||  |||||||||||||||| ||||||||| | || ||||| ||||||||||| || |||||    
T  47621672 tcttgttgttcaaagtggatttcgaaaaggcgcacgactctgtcgattgggggtatctagatga 47621735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 569
Target Start/End: Complemental strand, 39432027 - 39431766
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtc 407  Q
    ||||||| ||||| |  |||||||||||||||||  ||||||||||| | |||||| |  | || || ||  |||||   || |||||||||||||||||    
T  39432027 tgaatgattttcgtctgatttctttggtggggagtatgtacaaaattattgcgaaattattagctaatagactgagagtagtgattgggagtgttgtgtc 39431928  T
Q  408 ggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctg 507  Q
     ||  | ||||| |||||||||||| |  | ||||| |||||||||||  |||| |||||||| || ||||||||||||   || |   |||| |||||     
T  39431927 cgagacgcagtcggcttttgtgaagaaacgccaaatccttgatggtattctgatagctaatgaagttgttgatgaagcttttaagttaaagaaggatctc 39431828  T
Q  508 ttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
     |  |||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||    
T  39431827 atgttgtttaaagtggattttgaaaaggcttatgactctgttgattggggttaccttgatga 39431766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 347
Target Start/End: Original strand, 22190108 - 22190220
Alignment:
Q  235 aatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttgg 334  Q
    |||||||||||||| ||||| ||||||   || || ||||| || || ||||||||||  | ||| ||| | |||||||| |||||||||||||||||||    
T  22190108 aatgggaaattaactaaaggtataaatagcacttttatagcactcatacctaaagttgacaatcctcaaacactgaatgattttcgccctatttctttgg 22190207  T
Q  335 tggggagcttgta 347  Q
    |||||||| ||||    
T  22190208 tggggagcatgta 22190220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 512 - 569
Target Start/End: Complemental strand, 20797197 - 20797140
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||| |||||||||||||||||||| || || ||||| |||||||| |||||||||||    
T  20797197 tgtttaaagtggattttgaaaaggcttacgactctgttgattggggttaccttgatga 20797140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 3543711 - 3543763
Alignment:
Q  520 gtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatgatgt 572  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||| ||||||||    
T  3543711 gtggattttgaaaaggcgtatgattcggtcaattggggatacctagatgatgt 3543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 362
Target Start/End: Original strand, 25527995 - 25528134
Alignment:
Q  223 gaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcc 322  Q
    ||||| ||||||||||| |  || || ||||| || |||  ||| ||||| || ||||||||||| |||| |||||| |||    ||||||| |||| ||    
T  25527995 gaatttcataggaatggaaggttgaccaaagggattaatagtactttcattgctcttatccctaaggttgatagtcctcaacggttgaatgactttctcc 25528094  T
Q  323 ctatttctttggtggggagcttgtacaaaattttggcgaa 362  Q
    ||||||||||||| || ||  |||| ||||||||||||||    
T  25528095 ctatttctttggttggaagtatgtataaaattttggcgaa 25528134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 569
Target Start/End: Complemental strand, 48711709 - 48711575
Alignment:
Q  435 tagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaag 534  Q
    |||||||||| | ||||  || ||||||||||||||| | |||||||| ||||  || ||| | ||||||||  |  | || ||||| |||||||| |||    
T  48711709 tagacaaattttggatgacattttgatcgctaatgagcttgttgatgatgctaaaaagtctaataaagatcttcttctttttaaagttgattttgagaag 48711610  T
Q  535 gcgtatgattctgtagattgggggtaccttgatga 569  Q
    || ||||| || || ||||||||||| ||||||||    
T  48711609 gcatatgactcggtggattgggggtatcttgatga 48711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 470
Target Start/End: Complemental strand, 5498858 - 5498593
Alignment:
Q  205 attgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaat 304  Q
    ||||||||||||||| | ||||||||  | ||||||||  || | ||||| || ||| |||| ||||| ||||| || |||||||| | |||||| ||      
T  5498858 attgtgcgctttgtgtctgaattccaccgcaatgggaagctatccaaaggtatcaatactactttcattgccctcattcctaaagtagatagtcctcaga 5498759  T
Q  305 ctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgt 404  Q
      || ||||| ||||| ||||| ||||||||||||||  | || || |||||||| ||| | || || || || ||| |   ||| |||||    |||||    
T  5498758 agcttaatgattttcgtcctatctctttggtggggagtctttataagattttggctaaattgctagccaatagattgcggggggtcattggttcagttgt 5498659  T
Q  405 gtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
     |||||| ||||||| |||||||| ||| ||||||||||| | || |||||  |||| ||||||||    
T  5498658 ttcggaatctcagtcggcttttgttaagaatagacaaattttggacggtattctgattgctaatga 5498593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 23295026 - 23294989
Alignment:
Q  520 gtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  23295026 gtggattttgaaaaggcttatgattctgtggattgggg 23294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 25503394 - 25503443
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||| ||||| |||||||| |||||||||||  ||||||||||||||||    
T  25503394 aatgactttcgtcctatttccttggtggggagtatgtacaaaattttggc 25503443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 48435784 - 48435743
Alignment:
Q  415 cagtctgcttttgtgaaggatagacaaattcttgatggtatc 456  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  48435784 cagtctgcttttattaaggataggcaaattcttgatggtatc 48435743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 21411991 - 21411959
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagc 342  Q
    ||||| |||||||||||||||||||||||||||    
T  21411991 aatgattttcgccctatttctttggtggggagc 21411959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 26 - 569
Target Start/End: Complemental strand, 23240404 - 23239861
Alignment:
Q  26 gtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtgggattg 125  Q
    |||||||||| ||||||||| |||||||||||  | | || |||||||| |||  ||||||||||||| ||||||| |||||||| ||||||||||||||    
T  23240404 gtgtgggacaccttcagtttcggaaactctcttatctagaaaggggcggattgactaaacccttttctgaggatgaaattaaggcagcggtgtgggattg 23240305  T
Q  126 tgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgaccgaa 225  Q
    ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  23240304 tgatagttttaagagtccgggccctgatgggatcaacttgggtttttttaagtctttttggcctgagataaaaacagatttagtgcgatttgtaaccgaa 23240205  T
Q  226 ttccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcccta 325  Q
    || ||||||||||| |||||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||| ||||||||||||| ||||    
T  23240204 tttcataggaatggaaaattagcgaaaggcataaattctacgttcatagccctaattcctaaagttgcgagtccacaatctttgaatgagtttcggccta 23240105  T
Q  326 tttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttt 425  Q
    ||||||| ||||||||| |||| |||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  23240104 tttctttagtggggagcatgtataaaattctagcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtccgaggctcagtctgcttt 23240005  T
Q  426 tgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggat 525  Q
    ||| ||  | |||||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||  | ||||| |||| ||  ||||||||||||||    
T  23240004 tgttaaaaacagacaaattcttgatggtattttgatcgctaattaggtggtcgatgaggcaaggaaacttaagaaatatcttttgttgttcaaagtggat 23239905  T
Q  526 tttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  23239904 tttgcaaaggcgtatgattctgttgattgggggtaccttgatga 23239861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 216 - 566
Target Start/End: Complemental strand, 42515553 - 42515203
Alignment:
Q  216 tgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgag 315  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||  ||||||||    
T  42515553 tgtgactgaattccataggaatgggaaattgacgaaaggcataaattctacattcatcgcccttattcctaaagttgctagccctcaatcgttgaatgag 42515454  T
Q  316 tttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||    
T  42515453 tttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctagcaaacaggttgaggcaggttattgggagtgttgtgtctgaaactc 42515354  T
Q  416 agtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgtt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||| ||||||| || ||  ||||    
T  42515353 agtctgcttttgtgaaggatagacaaattcttgatggtatcttgattgcgaatgaggtggttgatgaggcaaggagatctaagaaagaccttttgttgtt 42515254  T
Q  516 caaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42515253 caaagtagattttgaaaaggcgtatgattcggtagattgggggtaccttga 42515203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 30728455 - 30728788
Alignment:
Q  22 ccgagtgtgggacatcttcagtttaggaaactctctcttatcgagaggggcgggttggttaaacccttttctaaggatgagattaaggcggcggtgtggg 121  Q
    ||||| ||||| || |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  30728455 ccgagcgtgggtcaccttcagtttaggaaactctccctttttgagaggggcgggttggttaaacccttttctgaggatgagattaaggcggctgtgtggg 30728554  T
Q  122 attgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttgtgac 221  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||| ||||||||||||||||    
T  30728555 attgtgatagttttaagagtccggaccctgatgggatcaacttgggtttttttaagtccttttggcctgagttgaaaacagatcttgtgcgctttgtgac 30728654  T
Q  222 cgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgc 321  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||| |||    
T  30728655 cgaaatccataggaatgggaaattaacgaaaggcataaattctacattcataacccttattcctaaagttgctagcccacaatctttgaatgagttccgc 30728754  T
Q  322 cctatttctttggtggggagcttgtacaaaattt 355  Q
    ||||||||||||||||||||||||||||||||||    
T  30728755 cctatttctttggtggggagcttgtacaaaattt 30728788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 353 - 569
Target Start/End: Original strand, 30730758 - 30730974
Alignment:
Q  353 ttttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatgg 452  Q
    |||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30730758 ttttggcgaaaattctagcaaacaagttgaggcaggttattggaagtgttgtgtcggaaactcagtctgcttttgtgaaggatagacaaattcttgatgg 30730857  T
Q  453 tatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagat 552  Q
    |||||||||||| ||||||||||||||||| || |||||| || ||||||| || ||  |||||||||||||||| || ||||||||||||| |||||||    
T  30730858 tatcttgatcgcgaatgaggtggttgatgaggcaaggaaaactaagaaagaccttttgttgttcaaagtggatttcgagaaggcgtatgattttgtagat 30730957  T
Q  553 tgggggtaccttgatga 569  Q
    |||||||||||||||||    
T  30730958 tgggggtaccttgatga 30730974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 103 - 566
Target Start/End: Original strand, 25855633 - 25856096
Alignment:
Q  103 attaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacgg 202  Q
    |||||| ||||||||||||||||||| || || || ||||||| ||| ||||| || || || |||||| |||||  |||||||  ||||||||||  ||    
T  25855633 attaagtcggcggtgtgggattgtgatagctttaaaagtccgggccccgatggcattaattttggtttcattaagaatttttggaatgagatgaaagagg 25855732  T
Q  203 atattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccaca 302  Q
    || ||||| | ||||| || || || |||||||||||||  ||  ||||||| |||||| |||| ||||| |||||||| |||||||| |   | || ||    
T  25855733 atgttgtgagatttgtcactgagtttcataggaatgggaggttgtcgaaaggtataaatgctacgttcattgcccttatacctaaagtagagtgccctca 25855832  T
Q  303 atctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgtt 402  Q
    ||| |||||||| ||| | || ||||| |||||||||||  | || ||||||||||| ||  || | || || |||||| | ||||||||||||||||||    
T  25855833 atccctgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaagcttatagctaataggttgcgtcaggttattgggagtgtt 25855932  T
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaag 502  Q
    |||||||| | |||||| || ||||| ||  |||| |||||||||||||| ||  |||| |||||||||||||||||||| ||| | || ||| ||||||    
T  25855933 gtgtcggacgttcagtccgcgtttgttaaaaataggcaaattcttgatggcattctgatagctaatgaggtggttgatgaggctcgtaagtctaagaaag 25856032  T
Q  503 atctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    |||||||  |||| |||||||||||||| ||||||||||| || || ||||||||||| |||||    
T  25856033 atctgttgttgtttaaagtggattttgagaaggcgtatgactcagttgattgggggtatcttga 25856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 229 - 569
Target Start/End: Complemental strand, 33171478 - 33171138
Alignment:
Q  229 cataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctattt 328  Q
    ||||||||||| |||||  | ||||| ||||||||||| || || || ||||| ||||||||||  ||||| ||  |  ||||||| ||||| || ||||    
T  33171478 cataggaatggaaaattgtcaaaaggtataaattctacgtttattgctcttattcctaaagttgacagtcctcagacattgaatgattttcgacccattt 33171379  T
Q  329 ctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgt 428  Q
    | ||||||||  || | || |||||| |||| ||| ||||||| |||||||||||||| |||||||| ||||||||||| |||| ||| || ||||| ||    
T  33171378 cgttggtgggatgcctctataaaattatggcaaaagttctggcgaacaggttgagacaagttattggcagtgttgtgtctgaagttcaatcagctttcgt 33171279  T
Q  429 gaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggatttt 528  Q
     ||| ||||||||||||||||||| |||||||| || ||||||||||||||||| ||  | |||||  ||||||| || |||||||| ||||| ||||||    
T  33171278 taagaatagacaaattcttgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagcttttaatgtttaaagtagatttt 33171179  T
Q  529 gaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||||||||||||| || |||||||||  ||| ||||||||    
T  33171178 gaaaaggcgtatgactccgtagattggacgtatcttgatga 33171138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 308 - 569
Target Start/End: Original strand, 27164494 - 27164755
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtc 407  Q
    ||||||| ||||| |||||||| ||| |||| ||  | || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||    
T  27164494 tgaatgattttcgacctatttcgttgttgggtagtctttataaaattttggcaaaaatcctagcaaacaggttgagacaggttatcgggagtgttgtgtc 27164593  T
Q  408 ggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctg 507  Q
     |||| |||  |||||||||| ||  ||||| ||||||||||||| ||  | || |||||||||||||| ||||| ||    |||||| ||||||||||     
T  27164594 agaagttcaacctgcttttgttaaaaatagaaaaattcttgatggaattctaatagctaatgaggtggtcgatgaggcacataaatctaagaaagatctt 27164693  T
Q  508 ttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
     |  ||||||||||||| ||||||||||| || || ||||| |||||||||||||| |||||    
T  27164694 atgttgttcaaagtggactttgaaaaggcttacgactctgttgattgggggtacctagatga 27164755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 509
Target Start/End: Original strand, 33384400 - 33384806
Alignment:
Q  103 attaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacgg 202  Q
    |||||| ||||||||||||||||||||||||| || || | ||  || ||||| || || || | |||  |||||  |||||||   ||||||||   ||    
T  33384400 attaagtcggcggtgtgggattgtgacagttttaaaagcctgggtcccgatggcattaattttgattttattaagaatttttggaacgagatgaaggagg 33384499  T
Q  203 atattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccaca 302  Q
    || ||||| | ||||| ||  | || |||||||| ||||  ||  |||||||  |||||||||| ||||| |||||||| |||||||| |  ||||| ||    
T  33384500 atgttgtgagatttgttactaattttcataggaacgggaggttgtcgaaaggtttaaattctacgttcattgcccttattcctaaagtagagagtcctca 33384599  T
Q  303 atctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgtt 402  Q
    |||  ||||||| ||| | || ||||| |||||||||||  | || ||||||||||| |||||||| || |  | | |  | |||||||||||||||||     
T  33384600 atccttgaatgattttagaccgatttcgttggtggggagtctttataaaattttggcaaaaattctagctactatgctacgtcaggttattgggagtgtc 33384699  T
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaag 502  Q
    ||||| || | | | || || ||||| ||  |||| |||||||||||||| ||  |||| |||||||||||||||||||| ||| | || ||| ||||||    
T  33384700 gtgtctgatgtttaatccgcgtttgttaaaaataggcaaattcttgatggaattctgatagctaatgaggtggttgatgaggctcgcaagtctaagaaag 33384799  T
Q  503 atctgtt 509  Q
    || ||||    
T  33384800 atttgtt 33384806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 557
Target Start/End: Original strand, 6999500 - 6999651
Alignment:
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    ||||| ||||||||||| ||||| ||  | ||||| ||||||||||||||  | || |||||||||| ||| ||||| ||||||||||   |||||||||    
T  6999500 tcggatgctcagtctgcgtttgttaaaaacagacatattcttgatggtattcttatagctaatgaggcggtggatgaggctaggaaattgaagaaagatc 6999599  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    | ||  |||| || ||||||||||||||||| |||||||  || ||||||||    
T  6999600 ttttgttgtttaaggtggattttgaaaaggcctatgattaagtcgattgggg 6999651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 557
Target Start/End: Original strand, 10485355 - 10485601
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||||||| | || |||||| |||||||||| || || ||||||||||| ||| |  |||| ||  | |||| |  ||| ||||| |||||||| || |    
T  10485355 aatgagtttaggcccatttctctggtggggagtttatataaaattttggcaaaagtattggctaatcgtttgaaaggggtgattggtagtgttgtttctg 10485454  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgtt 509  Q
    || ||||  | ||||||||| |  ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||| |   || | |||| ||| | ||    
T  10485455 aaactcaaacagcttttgtgcaaaatagacagattctcgatggtattttgatagctaatgaggtggtggatgaggctcgccgatttaagaaggat-tttt 10485553  T
Q  510 aatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
      |||| || || |||||| ||||||||||||||||| ||||||||||    
T  10485554 gttgtttaaggttgatttttaaaaggcgtatgattctatagattgggg 10485601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 476
Target Start/End: Complemental strand, 1822588 - 1822422
Alignment:
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||| ||||| ||||| || |||||||||||| | || ||||||||||| |||| | | |  || || ||| ||||||| ||||| | |||| | || |    
T  1822588 aatgattttcggcctatatcattggtggggagcatttataaaattttggcaaaaactttagtgaatagattgggacaggtgattggtaatgttatttctg 1822489  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggt 476  Q
    | |||| |||  ||||||| ||||||||||  ||||||||||||||  |||| ||||||||||||||    
T  1822488 atgctcggtcaacttttgttaaggatagacgcattcttgatggtattctgatagctaatgaggtggt 1822422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 557
Target Start/End: Complemental strand, 36257601 - 36257267
Alignment:
Q  223 gaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcc 322  Q
    ||||| ||||||||||| || ||||  ||||| || |||||||| || ||||| ||||| ||||| || | |  ||| |||||| | | ||| ||||| |    
T  36257601 gaatttcataggaatggtaagttaatcaaaggtatcaattctacttttatagctcttattcctaaggtagattctcctcaatctttaagtgattttcgtc 36257502  T
Q  323 ctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgc 422  Q
    |||| || ||||| || || ||||| || ||| |||| ||  |  |||| || |||||||| ||||| ||||| |||||  | || || | |||| ||||    
T  36257501 ctatatcattggttggtagtttgtataagattctggctaagttgttggctaataggttgaggcaggtcattggtagtgtcatttctgatgttcagactgc 36257402  T
Q  423 ttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtg 522  Q
     ||||| ||| ||||||||||| | ||||| ||  |||| || |||||||| || ||||| ||| | |||  | |||| ||  |||| ||||| || |||    
T  36257401 gtttgttaagaatagacaaattttagatggcattctgattgcgaatgaggttgtggatgaggctcgtaaaaataagaaggaattgttgatgtttaaggtg 36257302  T
Q  523 gattttgaaaaggcgtatgattctgtagattgggg 557  Q
    |||||||| || |||||||||||||| ||||||||    
T  36257301 gattttgagaaagcgtatgattctgttgattgggg 36257267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 25591830 - 25591782
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggta 560  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  25591830 tgttcaaagtggattttgaaaaggcatatgactcggtagattgggggta 25591782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 557
Target Start/End: Complemental strand, 6050851 - 6050732
Alignment:
Q  438 acaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcg 537  Q
    ||||||||||||||||||  | || || |||||||| || ||||| |||||||| |   ||||||||||  |  |||| || |||||||||||||||||     
T  6050851 acaaattcttgatggtattcttatagcaaatgaggttgtggatgaggctaggaagttgaagaaagatcttatgttgtttaaggtggattttgaaaaggcc 6050752  T
Q  538 tatgattctgtagattgggg 557  Q
    ||||| ||||| ||||||||    
T  6050751 tatgactctgtcgattgggg 6050732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 548
Target Start/End: Original strand, 30508527 - 30508662
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaat 512  Q
    |||||||||||||| | ||| ||||||| ||||||||||||||  | || || ||||||||||| ||||||||||  || | | ||||||||||  |  |    
T  30508527 ctcagtctgcttttattaagaatagacagattcttgatggtattcttatagccaatgaggtggtggatgaagctaaaaagtttaagaaagatcttatgtt 30508626  T
Q  513 gttcaaagtggattttgaaaaggcgtatgattctgt 548  Q
    ||| || |||||||| ||||| ||||| || |||||    
T  30508627 gtttaaggtggatttcgaaaaagcgtacgactctgt 30508662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 548
Target Start/End: Original strand, 30548870 - 30549005
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaat 512  Q
    |||||||||||||| | ||| ||||||| ||||||||||||||  | || || ||||||||||| ||||||||||  || | | ||||||||||  |  |    
T  30548870 ctcagtctgcttttattaagaatagacagattcttgatggtattcttatagccaatgaggtggtggatgaagctaaaaagtttaagaaagatcttatgtt 30548969  T
Q  513 gttcaaagtggattttgaaaaggcgtatgattctgt 548  Q
    ||| || |||||||| ||||| ||||| || |||||    
T  30548970 gtttaaggtggatttcgaaaaagcgtacgactctgt 30549005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 29326837 - 29326779
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| |||||||    
T  29326837 atgtttaaagtggattttgaaaaagcttatgattctgttgattggggctacattgatga 29326779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 569
Target Start/End: Complemental strand, 19509667 - 19509615
Alignment:
Q  517 aaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||||||||||||||||||||||||||  || |||||||| || ||||||||    
T  19509667 aaagtggattttgaaaaggcgtatgatttggtcgattggggttatcttgatga 19509615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 17830333 - 17830266
Alignment:
Q  388 gttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtat 455  Q
    |||||||| |||||| | || || || ||||||||||||||||| |  ||||||||||||||||||||    
T  17830333 gttattggtagtgttatatcagatgcacagtctgcttttgtgaaaggaagacaaattcttgatggtat 17830266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 488
Target Start/End: Original strand, 21823105 - 21823190
Alignment:
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctag 488  Q
    |||||||| |||||||| ||||||||    | || ||||||||||||||||||  | || ||||||||||| |||||||| |||||    
T  21823105 gtgtcggatgctcagtcagcttttgttcgaggtaaacaaattcttgatggtattcttattgctaatgaggttgttgatgaggctag 21823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 29326935 - 29326878
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  29326935 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 29326878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 100 - 566
Target Start/End: Original strand, 33514383 - 33514850
Alignment:
Q  100 gagattaaggcggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaa 199  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||  || ||||| ||||| || || ||  | |||  ||||||| ||||||||||      
T  33514383 gagattaaggcagcggtgtgggactgtgacagttttaagagtccggggccagatggtatcaattttggatttatcaagaatttttggactgagatgaagg 33514482  T
Q  200 cggatattgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtcc 299  Q
      |||| |||||| ||| | || |||||||||| ||||||||  ||  ||||||| || |||||||| |||||  | ||||| ||||||||||  || ||    
T  33514483 atgatactgtgcgatttctaactgaattccatacgaatgggaggttgtcgaaaggtattaattctacgttcattactcttattcctaaagttgagagccc 33514582  T
Q  300 acaatctctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagt 399  Q
    ||||||| ||||||||||| | ||||| ||  ||||||||||  | || ||||||||||| |||||||| ||||| ||| ||||||| ||||||| |||     
T  33514583 acaatctttgaatgagtttagacctatatcgctggtggggagtctttataaaattttggcaaaaattctagcaaataggctgagacaagttattgtgagc 33514682  T
Q  400 gttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcaga 499  Q
    ||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||  |||| |||||||||||||||||||| ||| | |||||  |||    
T  33514683 gttgtgtcggatgctcaatctgcgtttgtgaaagataggcaaattcttgatggtattctgatagctaatgaggtggttgatgaggctcgtaaatccaaga 33514782  T
Q  500 aagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattggg-ggtaccttga 566  Q
    | ||||||||  ||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||    
T  33514783 aggatctgttgttgttcaaagtggactttgaaaaggcgtatgattttgttgattgggaggtaccttga 33514850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 569
Target Start/End: Original strand, 11230115 - 11230296
Alignment:
Q  388 gttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagcta 487  Q
    |||||||| ||||||||||| ||  |||||||  ||||||||||| |  | ||||| ||||||||||| ||||| |||||||| || |||||| |||||     
T  11230115 gttattggcagtgttgtgtccgagactcagtcaacttttgtgaagaagcgccaaatccttgatggtattttgatagctaatgaagttgttgattaagctt 11230214  T
Q  488 ggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
      || |   |||| |||||  |  |||| ||||| |||||||||||||| || || || || |||||||| |||||||||||    
T  11230215 ttaagttaaagaaggatctcatgctgtttaaagtagattttgaaaaggcttacgactccgttgattggggttaccttgatga 11230296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 485
Target Start/End: Complemental strand, 37327268 - 37327222
Alignment:
Q  439 caaattcttgatggtatcttgatcgctaatgaggtggttgatgaagc 485  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||    
T  37327268 caaattttagatggtatcttgatggctaatgaggtggttgatgaagc 37327222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 368
Target Start/End: Original strand, 4221265 - 4221398
Alignment:
Q  235 aatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgccctatttctttgg 334  Q
    ||||| |||||||| ||||| ||||||   || |||||| | ||||| || ||||||| || ||| |||    ||||||| ||||||||||||||||||     
T  4221265 aatggtaaattaactaaaggtataaataacaccttcataacacttataccaaaagttgataatcctcaaaagttgaatgactttcgccctatttctttgt 4221364  T
Q  335 tggggagcttgtacaaaattttggcgaaaattct 368  Q
    |||||||  ||||||||||| |||| ||| ||||    
T  4221365 tggggagtatgtacaaaattctggctaaagttct 4221398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 569
Target Start/End: Original strand, 9667485 - 9667666
Alignment:
Q  388 gttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagcta 487  Q
    |||||||| ||||||||||| ||  | || || |||||||||||| |    ||||| |||||||||||  |||| |||||||| || ||||||||||||     
T  9667485 gttattggtagtgttgtgtctgagacgcaatcggcttttgtgaagaaacaccaaatccttgatggtattctgatagctaatgaagttgttgatgaagctt 9667584  T
Q  488 ggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
      || |   |||| |||||  |  |||| |||||||||||||||||||| || || || || |||||||| |||||||||||    
T  9667585 ttaagttaaagaaggatctcatgctgtttaaagtggattttgaaaaggcttacgactcagttgattggggttaccttgatga 9667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 22724103 - 22724148
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    ||||||||||||||||||||||||| ||||| || ||| |||||||    
T  22724103 tgttcaaagtggattttgaaaaggcatatgactcggtatattgggg 22724148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 206 - 566
Target Start/End: Complemental strand, 1389 - 1029
Alignment:
Q  206 ttgtgcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatc 305  Q
    ||||||| ||| | || |||||||||||||||||||| ||  |||| || ||||||||||||||||| || ||||| || |||||||  || || |||||    
T  1389 ttgtgcgttttatcactgaattccataggaatgggaagttgtcgaatggtataaattctacattcattgctcttattccgaaagttgagagccctcaatc 1290  T
Q  306 tctgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtg 405  Q
    | ||||||||||| | ||| | ||  ||||||||||  | || ||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||    
T  1289 tttgaatgagtttagacctgtctcgctggtggggagtctttataaaatattggcaaaaattctagtaaataggttgagacaggttattgggagtgttgtg 1190  T
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    || ||  || | ||||| ||||| ||  |||| ||||||||||||||||| ||||| || ||||||||||| ||||| ||  | |||||| ||||| |||    
T  1189 tcagatacttaatctgcgtttgttaaaaataggcaaattcttgatggtattttgatagccaatgaggtggtggatgaggcgcgcaaatctaagaaatatc 1090  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    | ||  | ||||| || || ||||| ||||||||||| ||||| || | ||||||||||||    
T  1089 ttttgttattcaaggtagactttgagaaggcgtatgactctgttgactaggggtaccttga 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 110 - 566
Target Start/End: Original strand, 17604535 - 17604991
Alignment:
Q  110 cggcggtgtgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgt 209  Q
    ||||||||||||||||||| || || || ||||||| ||| ||||| || || || |||||| |||||  |||||||  ||||| |||   |||| ||||    
T  17604535 cggcggtgtgggattgtgaaagctttaaaagtccgggccccgatggcattaattttggtttcattaagaatttttggaatgagaggaaggaggatgttgt 17604634  T
Q  210 gcgctttgtgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctg 309  Q
    | | ||||| || ||||| ||||| || ||||  ||  ||||||| ||||||||||| ||||| ||||||||||||||||| |   | || |||||  ||    
T  17604635 gagatttgttactgaatttcatagaaacgggaggttgtcgaaaggtataaattctacgttcattgcccttatccctaaagtagagtgccctcaatccttg 17604734  T
Q  310 aatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcgg 409  Q
    ||||| ||  | || ||||| |||||||||||  | || |||||| |||| ||  |||| || || ||||||   |||||| |||||||||||||||| |    
T  17604735 aatgatttcagaccgatttcgttggtggggagtctttataaaattctggcaaagcttctagccaataggttgcatcaggttgttgggagtgttgtgtctg 17604834  T
Q  410 aagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgtt 509  Q
    | | ||| || || ||||| ||  |||| |||||||||||||| ||  |||| || ||||||||||||||||| ||| | || ||| |||||||| ||||    
T  17604835 atgttcaatccgcgtttgttaaaaataggcaaattcttgatggaattctgatagccaatgaggtggttgatgaggctcgtaagtctaagaaagatatgtt 17604934  T
Q  510 aatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
      |||| ||||||||||||||||||| |||||| || || ||||||||||| |||||    
T  17604935 gttgtttaaagtggattttgaaaaggtgtatgactcagttgattgggggtatcttga 17604991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 441 - 569
Target Start/End: Complemental strand, 2555212 - 2555084
Alignment:
Q  441 aattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtat 540  Q
    ||||||| ||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||| ||  |||||||||||||||||||||| | ||||    
T  2555212 aattcttcatggtattttgatcgctaatgaggtggttgatgaggcaaggaaatctaagaaagatcttttgttgttcaaagtggattttgaaaaagtgtat 2555113  T
Q  541 gattctgtagattgggggtaccttgatga 569  Q
    |||| ||| ||||||||||||||||||||    
T  2555112 gattatgttgattgggggtaccttgatga 2555084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 385 - 566
Target Start/End: Original strand, 17576193 - 17576374
Alignment:
Q  385 caggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaag 484  Q
    |||||||||||||||||||||||||| | |||||| || ||||| ||  |||| |||||||||||||| ||  |||| |||||||||||||||||||| |    
T  17576193 caggttattgggagtgttgtgtcggacgttcagtccgcgtttgttaaaaataggcaaattcttgatggcattctgatagctaatgaggtggttgatgagg 17576292  T
Q  485 ctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttga 566  Q
    || | || ||| |||||||||||||  |||| |||||||||||||| ||||||||||| || || || |||||||| |||||    
T  17576293 ctcgtaagtctaagaaagatctgttgttgtttaaagtggattttgagaaggcgtatgactcagttgactgggggtatcttga 17576374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 308 - 569
Target Start/End: Complemental strand, 13939458 - 13939198
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtc 407  Q
    ||||||| ||||| ||  |||| ||||||||  || | || |||||| |||| ||  ||||||| ||||||||||||||||||||||| ||||||||||     
T  13939458 tgaatgattttcgacccttttcgttggtgggatgcctctataaaattctggcaaattttctggcgaacaggttgagacaggttattggcagtgttgtgtt 13939359  T
Q  408 ggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctg 507  Q
     |||| ||| || ||||| || ||  ||||||||||| ||||||| |||||||| || ||||||||||||||||| ||  | |||||  ||||||| ||     
T  13939358 tgaagttcaatcagctttcgttaaaaatagacaaattattgatggaatcttgatagcaaatgaggtggttgatgaggcccgaaaatcgaagaaagagctt 13939259  T
Q  508 ttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    |||||||| ||||| ||||||| |||||||||||| || | |||||||  ||| ||||||||    
T  13939258 ttaatgtttaaagtagattttg-aaaggcgtatgactccgcagattggacgtatcttgatga 13939198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 569
Target Start/End: Original strand, 18681037 - 18681236
Alignment:
Q  370 gcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatg 469  Q
    ||||||||||||||||| |||||||| |||||| |||| |||| ||| || || ||||| ||  ||||||||||||||||||| |||||||| ||||| |    
T  18681037 gcaaacaggttgagacacgttattggcagtgttatgtcagaagttcaatccgcctttgtaaaaaatagacaaattcttgatggaatcttgatagctaacg 18681136  T
Q  470 aggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    || |||||||||| ||| | ||| |  ||||||| || ||  |||| |||||||| ||||||||| | |||||||| || || |||||||| ||||||||    
T  18681137 agttggttgatgaggctcgaaaaacgaagaaagagcttttgttgtttaaagtggactttgaaaagacatatgattccgttgaatgggggtatcttgatga 18681236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 223 - 563
Target Start/End: Original strand, 15955299 - 15955637
Alignment:
Q  223 gaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtttcgcc 322  Q
    ||||| ||| ||||||| || ||  ||||||| ||||||| ||  ||||| || || || ||||||||||  ||||| |||||  ||||||| ||||| |    
T  15955299 gaatttcattggaatggaaagttgtcgaaaggtataaattatatgttcattgctctaatacctaaagttgagagtcctcaatccttgaatgattttcgac 15955398  T
Q  323 ctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgc 422  Q
    |||||||  | ||||| ||  | || |||||| |||| |||||| | | |||||||||||||||||| ||||||||||||||||| ||||  |  | |||    
T  15955399 ctatttcactagtgggaag--tctataaaattctggcaaaaattgtaggaaacaggttgagacaggtcattgggagtgttgtgtcagaagtcctatttgc 15955496  T
Q  423 ttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtg 522  Q
     ||||| ||  ||||| ||||||||||||  ||  |||| ||||||||||| || ||||| ||  | ||| || |||||||||| ||  | |||||||||    
T  15955497 atttgttaaaaatagataaattcttgatgaaattctgatagctaatgaggttgtcgatgaggcacgaaaaactaagaaagatctcttgttattcaaagtg 15955596  T
Q  523 gattttgaaaaggcgtatgattctgtagattgggggtacct 563  Q
    ||||||||||||||||| || ||| | |||||| |||||||    
T  15955597 gattttgaaaaggcgtacgactctattgattggaggtacct 15955637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 406 - 557
Target Start/End: Original strand, 11059359 - 11059510
Alignment:
Q  406 tcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatc 505  Q
    ||||| ||||||||||| ||||| ||  | ||||||||||||||||||||  | || || |||||||  || ||||| |||||||||| | |||||||||    
T  11059359 tcggatgctcagtctgcatttgttaaaaagagacaaattcttgatggtattcttatagcaaatgaggctgtggatgaggctaggaaatttaagaaagatc 11059458  T
Q  506 tgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    | ||  |||| || ||||||||||||||||| ||||||||||| ||||||||    
T  11059459 ttttgttgtttaaggtggattttgaaaaggcctatgattctgtcgattgggg 11059510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 22575634 - 22575585
Alignment:
Q  224 aattccataggaatgggaaattaacgaaaggaataaattctacattcata 273  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22575634 aattccataggaatgggaaattaacgaaaggcataaattctacgttcata 22575585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 557
Target Start/End: Complemental strand, 25351838 - 25351715
Alignment:
Q  434 atagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaa 533  Q
    |||||||||| |||||||| || ||||| |||||||||||||| ||||| ||||| ||  || |||| ||  || |  | || ||||| |||||||||||    
T  25351838 atagacaaatccttgatggcattttgatagctaatgaggtggtcgatgaggctagaaaggctaagaaggagatgatgctttttaaagttgattttgaaaa 25351739  T
Q  534 ggcgtatgattctgtagattgggg 557  Q
    ||| ||||| ||||| ||||||||    
T  25351738 ggcttatgactctgttgattgggg 25351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 18293978 - 18294028
Alignment:
Q  511 atgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtac 561  Q
    ||||| ||||||||||||||||||||||||||||| || |||||| |||||    
T  18293978 atgtttaaagtggattttgaaaaggcgtatgattcggtggattggaggtac 18294028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 488
Target Start/End: Complemental strand, 26511830 - 26511776
Alignment:
Q  434 atagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctag 488  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  26511830 atagacagattcttgatggtattttgattgctaatgaggtggtagatgaggctag 26511776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 488
Target Start/End: Complemental strand, 26516946 - 26516892
Alignment:
Q  434 atagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctag 488  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  26516946 atagacagattcttgatggtattttgattgctaatgaggtggtagatgaggctag 26516892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 486
Target Start/End: Original strand, 17712108 - 17712173
Alignment:
Q  421 gcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagct 486  Q
    |||||||||||||| ||||||||||||||||||||  | || || ||||| || ||||||||||||    
T  17712108 gcttttgtgaaggacagacaaattcttgatggtattcttattgcaaatgaagttgttgatgaagct 17712173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 542
Target Start/End: Original strand, 17077573 - 17077700
Alignment:
Q  415 cagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgt 514  Q
    |||||||| ||||| ||  ||||||||||||||||||||||  | || || |||||||  || ||||| ||||| |||    |||||||||| ||  |||    
T  17077573 cagtctgcatttgttaaaaatagacaaattcttgatggtattcttatagcaaatgaggctgtggatgaggctagaaaactgaagaaagatcttttgttgt 17077672  T
Q  515 tcaaagtggattttgaaaaggcgtatga 542  Q
    | || ||||||||||||||||| |||||    
T  17077673 ttaaggtggattttgaaaaggcttatga 17077700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 482
Target Start/End: Complemental strand, 17255989 - 17255926
Alignment:
Q  419 ctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatga 482  Q
    ||||||||||||| |||||||| ||||||||||| |||   || |||||||||||||| |||||    
T  17255989 ctgcttttgtgaaagatagacagattcttgatggaatcccaattgctaatgaggtggtagatga 17255926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 557
Target Start/End: Complemental strand, 18590265 - 18589827
Alignment:
Q  118 tgggattgtgacagtttcaagagtccggaccctgatgggatcaacttgggtttctttaagtctttttggcctgagatgaaaacggatattgtgcgctttg 217  Q
    ||||| ||||| ||||||||||| |||| ||||||||| |||||||| | |||| |||||  ||||||| |||   | |||   |||||  || | ||||    
T  18590265 tgggactgtgatagtttcaagagcccgggccctgatggaatcaacttcgatttcattaaggatttttggactggcctaaaagatgatatcatgaggtttg 18590166  T
Q  218 tgaccgaattccataggaatgggaaattaacgaaaggaataaattctacattcatagcccttatccctaaagttgctagtccacaatctctgaatgagtt 317  Q
    |||| || |||||| ||||  ||||  | || | ||| |||||||| || || || || || || || ||||| | || ||| |||||||| ||||| ||    
T  18590165 tgactgagttccatcggaacaggaagctgactacaggtataaattccacttttattgctctaattcccaaagtggataatcctcaatctcttaatgattt 18590066  T
Q  318 tcgccctatttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcag 417  Q
     || || |||| ||||||||| |||||||| |||||| | || ||| |  |||| || || ||| ||||||||||||| |||||  | || ||| | ||     
T  18590065 ccgtcccatttatttggtgggaagcttgtataaaattctagcaaaattgttggcgaatagattgcgacaggttattggaagtgtcatctctgaaacacat 18589966  T
Q  418 tctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttca 517  Q
    ||||| ||||| ||  ||||| ||| | | |||||||| || || || ||||||||||||||||| ||| | ||  ||  ||||||  || | ||||| |    
T  18589965 tctgcatttgttaaaaatagaaaaaatttagatggtat-tttattgcaaatgaggtggttgatgaggctcgtaatactaggaaagaattgatgatgttta 18589867  T
Q  518 aagtggattttgaaaaggcgtatgattctgtagattgggg 557  Q
    | || ||||||||||||||||| || || || ||||||||    
T  18589866 aggttgattttgaaaaggcgtacgactcagttgattgggg 18589827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 34601802 - 34601751
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||||| || ||||| |||||||||||||| |||||||| |||||||||||    
T  34601802 tgaatgatttccgccccatttctttggtgggaagcttgtataaaattttggc 34601751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 34628344 - 34628293
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||||| || ||||| |||||||||||||| |||||||| |||||||||||    
T  34628344 tgaatgatttccgccccatttctttggtgggaagcttgtataaaattttggc 34628293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 34723078 - 34723027
Alignment:
Q  308 tgaatgagtttcgccctatttctttggtggggagcttgtacaaaattttggc 359  Q
    ||||||| || ||||| |||||||||||||| |||||||| |||||||||||    
T  34723078 tgaatgatttccgccccatttctttggtgggaagcttgtataaaattttggc 34723027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 5390002 - 5390059
Alignment:
Q  413 ctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatga 470  Q
    |||||||||| ||| | |||| ||||||||||||||||||||| ||||| || |||||    
T  5390002 ctcagtctgcgtttattaagggtagacaaattcttgatggtattttgattgcaaatga 5390059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 16479805 - 16479720
Alignment:
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctag 488  Q
    |||||||| |||||||| ||||||||    | || ||||||||||||||||||  | || ||||||||||| |||||||| |||||    
T  16479805 gtgtcggatgctcagtcagcttttgttcgaggtaaacaaattcttgatggtattcttattgctaatgaggttgttgatgaggctag 16479720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 488
Target Start/End: Original strand, 18487594 - 18487679
Alignment:
Q  403 gtgtcggaagctcagtctgcttttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctag 488  Q
    |||||||| |||||||| ||||||||    | || ||||||||||||||||||  | || ||||||||||| |||||||| |||||    
T  18487594 gtgtcggatgctcagtcagcttttgttcgaggtaaacaaattcttgatggtattcttattgctaatgaggttgttgatgaggctag 18487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 455 - 569
Target Start/End: Complemental strand, 4846 - 4732
Alignment:
Q  455 tcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaaggcgtatgattctgtagattg 554  Q
    |||||||||||||||||||||| ||||| || ||||||  | |||||||||| ||  ||||||||||||||||||||||||||| ||||||||| |||||    
T  4846 tcttgatcgctaatgaggtggtcgatgaggcaaggaaacttaagaaagatcttttgttgttcaaagtggattttgaaaaggcgtttgattctgttgattg 4747  T
Q  555 ggggtaccttgatga 569  Q
    |||||||||||||||    
T  4746 ggggtaccttgatga 4732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 325 - 557
Target Start/End: Original strand, 2974 - 3206
Alignment:
Q  325 atttctttggtggggagcttgtacaaaattttggcgaaaattctggcaaacaggttgagacaggttattgggagtgttgtgtcggaagctcagtctgctt 424  Q
    ||||||||||||||||| || || ||||||||||| ||| || |||| ||  |||||| |  ||| ||||| |||||||| ||  || ||||  | ||||    
T  2974 atttctttggtggggagtttatataaaattttggcaaaagttttggctaatcggttgaaaggggtgattggtagtgttgtttctaaaactcaaacagctt 3073  T
Q  425 ttgtgaaggatagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtgga 524  Q
    ||||| |  ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||| |   |||| |||| ||||| ||  |||| || || ||    
T  3074 ttgtgcaaaatagacagattctcgatggtatattgatagctaatgaggtggtggatgaggctcgccgatctaagaaggatcttttgttgtttaaggttga 3173  T
Q  525 ttttgaaaaggcgtatgattctgtagattgggg 557  Q
    |||||||||||||||||||||||||||||||||    
T  3174 ttttgaaaaggcgtatgattctgtagattgggg 3206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 557
Target Start/End: Complemental strand, 183730 - 183607
Alignment:
Q  434 atagacaaattcttgatggtatcttgatcgctaatgaggtggttgatgaagctaggaaatctcagaaagatctgttaatgttcaaagtggattttgaaaa 533  Q
    ||||||||||||||||||| ||  | || || |||||||| || ||||| |||||||||    |||||||||| ||   ||| || ||||||||||||||    
T  183730 atagacaaattcttgatgggattcttatagcaaatgaggttgtggatgaggctaggaaactgaagaaagatcttttgtcgtttaaggtggattttgaaaa 183631  T
Q  534 ggcgtatgattctgtagattgggg 557  Q
    ||| ||||| ||||| || |||||    
T  183630 ggcctatgagtctgttgactgggg 183607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 569
Target Start/End: Complemental strand, 33173 - 33121
Alignment:
Q  517 aaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatga 569  Q
    ||||| || ||||| ||||||||||||| ||| |||||||| |||||||||||    
T  33173 aaagtagactttgagaaggcgtatgattatgtggattggggttaccttgatga 33121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 58220 - 58164
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatg 568  Q
    ||||||| |||||||| ||||||| ||||||||| || || ||||||||||| ||||    
T  58220 tgttcaaggtggatttcgaaaaggtgtatgattcagttgactgggggtacctagatg 58164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 568
Target Start/End: Original strand, 140413 - 140469
Alignment:
Q  512 tgttcaaagtggattttgaaaaggcgtatgattctgtagattgggggtaccttgatg 568  Q
    ||||||| |||||||| ||||||| ||||||||| || || ||||||||||| ||||    
T  140413 tgttcaaggtggatttcgaaaaggtgtatgattcagttgactgggggtacctagatg 140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University