View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_high_80 (Length: 243)
Name: NF18406_high_80
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_80 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 4165659 - 4165454
Alignment:
| Q |
16 |
atgaagttggtgaggacattttctatgtactatgatgtgttggtggtggctctatacgagtccaaagggtttatatattattgctatacctccatcctta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4165659 |
atgaagttggtgaggacattttctatgtactatgatgtgt----ggtggctctatacgagtctaaagggtttatatattattgctatacctccatcctta |
4165564 |
T |
|
| Q |
116 |
taggtaggatggcataatggcattgaccaaataaattttacattaaatgtgccgataataatgtgtaatatacatcaatccaaaaatatatgtcgatttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4165563 |
taggtaggatggcataatggcattgaccaaataatttttacattaaatgtgccaataataatgtgtaatatacatcaatccaaaaatatatgtcgatttt |
4165464 |
T |
|
| Q |
216 |
tagtacaatg |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
4165463 |
tagtacaatg |
4165454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University