View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_85 (Length: 240)
Name: NF18406_high_85
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_85 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 24390602 - 24390824
Alignment:
| Q |
18 |
agtgttatcattccttaccgtgaaacttcttatgcgattcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaa |
117 |
Q |
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| T |
24390602 |
agtgttatcattccttaccgtgaaacttcttatgcgattcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctaattttatcaaaattcac |
24390701 |
T |
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| Q |
118 |
caaaagaaatctgagcgaaacaaacaaataatacaaatagagcgcgactattccatcgagtccaaatatctcatagtcaattcttgtcccattcgtggtt |
217 |
Q |
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| T |
24390702 |
caaaagaaatctgagcgaaacaaacaaataatacaaatagagcgcgactattccatcgagtccaaatatctcatagtcaattcttgtcccattcgtggtt |
24390801 |
T |
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| Q |
218 |
taatggagaacccgttgatcacc |
240 |
Q |
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| T |
24390802 |
taatggagaacccgttgatcacc |
24390824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 24384377 - 24384602
Alignment:
| Q |
18 |
agtgttatcattccttaccgtgaaacttcttatgcgattcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaa |
117 |
Q |
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|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||| |
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| T |
24384377 |
agtgttatcattccttaccgtgaatcatcttatgcgatttaggtgcgtttgcaagtcgtggaattctctaatctctagccctagttttatcaagattcac |
24384476 |
T |
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| Q |
118 |
caaaagaaatctgagcgaaacaaacaaataatacaaatagagcgcgactattc---catcgagtccaaatatctcatagtcaattcttgtcccattcgtg |
214 |
Q |
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| T |
24384477 |
cgaaacaaatctgaacgaaacaaacaaataatacgaatagagggagacacctcccgcatcgtgtccaaacgtctcatagtcaattattggcccgttcgtg |
24384576 |
T |
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| Q |
215 |
gtttaatggagaacccgttgatcacc |
240 |
Q |
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| T |
24384577 |
gtttagtggagaagccgttgatcacc |
24384602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 24383325 - 24383438
Alignment:
| Q |
28 |
ttccttaccgtgaaacttcttatgcgattcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaacaaaagaaat |
127 |
Q |
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||||||||||||||| |||||| ||||| ||| ||||||||||||| ||||||||| || || || ||||| ||||| |||||||| |||||||||| |
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| T |
24383325 |
ttccttaccgtgaaatttcttacacgatttaggcgcgtttgcaagtcttggaatgctttagtctctaaccctaaatttataaaaattcaccaaaagaaat |
24383424 |
T |
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| Q |
128 |
ctgagcgaaacaaa |
141 |
Q |
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|||| | ||||||| |
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| T |
24383425 |
ctgaacaaaacaaa |
24383438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 24956419 - 24956295
Alignment:
| Q |
23 |
tatcattccttaccgtgaaacttcttatgcg----attcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaac |
118 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| || ||||| ||||| |||||||| | |
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| T |
24956419 |
tatctttccttaccgtgaaacctcttatgcgtgcgattcaggtgtgtttgcaagtattggaatgctctaatctctaaccctaaatttattaaaattcacc |
24956320 |
T |
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| Q |
119 |
aaaagaaatctgagcgaaacaaaca |
143 |
Q |
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|||||||| |||| ||||||||||| |
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| T |
24956319 |
aaaagaaacctgaacgaaacaaaca |
24956295 |
T |
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