View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_87 (Length: 239)
Name: NF18406_high_87
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 55672083 - 55672294
Alignment:
| Q |
18 |
gttataaaatttgttaaattgaaatttgatataattatatcattgtgtctatgtctatatgtaatgtatgcgtataaatttcgtaagattttacccattt |
117 |
Q |
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| T |
55672083 |
gttacaaaatttgttaaattgaaatttgatataattatatcattgtgtctatgtctatatgtaatgtatgcgtataaatttcgtaagattttacccattt |
55672182 |
T |
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| Q |
118 |
caggcatttgctgcaacaatacacgtttcttttacatttgctccttaacaaaatgatcttaccaaaaacacaaaagaacaataatagtaaaaataaatag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55672183 |
caggcatttgctgcaacaatacacgtttcttttacatttgcttcttaacaaaatgatcttaacaaaaacacaaaagaacaataatagtaaaaataaatag |
55672282 |
T |
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| Q |
218 |
cagttttctgtg |
229 |
Q |
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|||||||||||| |
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| T |
55672283 |
cagttttctgtg |
55672294 |
T |
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