View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_high_88 (Length: 239)
Name: NF18406_high_88
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 47722690 - 47722478
Alignment:
| Q |
11 |
catagggcatagagtctaattaggttgatttgacacaaacaatctttcccgacggctacaaacagaaatcaacagcctattctacttccatcccatgcat |
110 |
Q |
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| T |
47722690 |
catagagcatagagtctaattaggttgatttgacacaaacaatctttcccgacggctacaaacagaaatcaacagcctattctacttccatcccatgcat |
47722591 |
T |
|
| Q |
111 |
actaacacgtcatttcaatccttttctttttcttccatcccaaaaatcttgtatatacttctgaaaaattataaaatttaatatattaaaataatcttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47722590 |
actaacacgtcatttcaatccttttctttttcttccatcccaaaaatcttgtatatacttctgaaaaattataaaatttaatatattaaaataatcttgt |
47722491 |
T |
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| Q |
211 |
atacacatatttt |
223 |
Q |
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||||||||||||| |
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| T |
47722490 |
atacacatatttt |
47722478 |
T |
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